View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18277_high_6 (Length: 428)

Name: NF18277_high_6
Description: NF18277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18277_high_6
NF18277_high_6
[»] chr3 (28 HSPs)
chr3 (11-428)||(22614599-22615016)
chr3 (120-416)||(30988742-30989038)
chr3 (84-413)||(22620297-22620626)
chr3 (165-427)||(21946346-21946608)
chr3 (167-428)||(22115806-22116067)
chr3 (165-428)||(22053427-22053690)
chr3 (106-428)||(22105429-22105751)
chr3 (106-416)||(22180150-22180460)
chr3 (120-428)||(21937874-21938182)
chr3 (107-410)||(22656490-22656793)
chr3 (165-428)||(21931142-21931405)
chr3 (106-428)||(22035238-22035560)
chr3 (103-409)||(22647604-22647910)
chr3 (120-317)||(22467400-22467597)
chr3 (160-428)||(22028721-22028989)
chr3 (160-428)||(22187709-22187977)
chr3 (120-317)||(22634955-22635152)
chr3 (262-428)||(18966566-18966732)
chr3 (121-322)||(22430620-22430821)
chr3 (120-317)||(22436080-22436277)
chr3 (120-204)||(37930308-37930393)
chr3 (120-409)||(22357451-22357740)
chr3 (120-324)||(22353261-22353465)
chr3 (221-324)||(22367474-22367577)
chr3 (120-386)||(22442191-22442457)
chr3 (166-386)||(22457984-22458204)
chr3 (166-386)||(22480965-22481185)
chr3 (120-199)||(22629892-22629971)
[»] chr1 (4 HSPs)
chr1 (120-413)||(34989953-34990246)
chr1 (122-428)||(2304925-2305230)
chr1 (120-428)||(34976092-34976400)
chr1 (120-428)||(34983203-34983511)
[»] chr5 (1 HSPs)
chr5 (120-395)||(40580688-40580963)
[»] chr7 (2 HSPs)
chr7 (103-318)||(872144-872360)
chr7 (103-318)||(1233421-1233637)


Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Original strand, 22614599 - 22615016
Alignment:
Q  11 gaacctgtgagccttcaatacttgccattaaatcattagaatttgcttctattgatagacggcggaattgtttacttaaagatgactgactgtcttcact 110  Q
    |||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22614599 gaacatgtgaaccttcaatacttgccattaaatcattagaatttgtttctattgatagacggcggaattgtttacttaaggatgactgactgtcttcact 22614698  T
Q  111 aatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22614699 aatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatc 22614798  T
Q  211 gaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcag 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22614799 gaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcag 22614898  T
Q  311 ctatccactgacgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcatc 410  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22614899 ctatccactgacgaagtagtatcttagattcaatttcatagtcttctgggtataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcatt 22614998  T
Q  411 ataactcaaacttaaaat 428  Q
    ||||||||||||||||||    
T  22614999 ataactcaaacttaaaat 22615016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 120 - 416
Target Start/End: Original strand, 30988742 - 30989038
Alignment:
Q  120 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 219  Q
    ||||||| ||||||||| ||||||||||| ||||||  | |||| |||||||||||||||||||| |||| |||| |||||||   ||| |||||| | |    
T  30988742 gcaaaaatttaaatcctcaaatttttcaaggatcatatcgcgtattagatcatgaacacgacaacctttagctttaccatcaactctaaccgaagatact 30988841  T
Q  220 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccact 319  Q
    |||||||| |||||||  |||||||||| ||||||   ||| ||||| ||||| || |||||||| |||||||| ||||| ||||||||||||| ||| |    
T  30988842 tgcaccaagcttctatggatcaactctgttaaatatccttctgcaacgtcttccaaagtcttccctctttcctccttcacgaacccttcagctacccatt 30988941  T
Q  320 gacgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcatcataact 416  Q
    | ||||  | | |||| || | || |||| | |||||||| |||| ||||||||||||||| |||||  | ||| |||||||||||||||| |||||    
T  30988942 gtcgaatcaatctctttgatttaacttcataatcttctggatatattccaaaatacaacaagcatgacttgagagagtaaggcaaatcatcgtaact 30989038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 84 - 413
Target Start/End: Original strand, 22620297 - 22620626
Alignment:
Q  84 acttaaagatgactgactgtcttcactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaa 183  Q
    |||||||||||| ||||  |||||||||||||    ||||||||||| ||||| | | |||||||  ||||||| ||||| |||||||||||| | ||||    
T  22620297 acttaaagatgaatgacaatcttcactaatatacttgcaaaaacttagatcctcacacttttcaagtatcatcatacgtattagatcatgaacgcaacaa 22620396  T
Q  184 cttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttcc 283  Q
    |||||   ||||||||| ||  | |  ||||| | |||||||||||||||||  |||||||||| ||| ||   ||| ||||||||||| || || ||||    
T  22620397 ctttttgtttttccatcgattcttagtgaagatacttgcaccaaacttctatggatcaactctgttaagtatccttctgcaacttcttccaaagtattcc 22620496  T
Q  284 ccctttcctctttcacaaacccttcagctatccactgacgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaaca 383  Q
    ||||||| ||||| |||||||||||||||||||| || ||||  | | |||| || |||| || | | |||||||| ||||||||||||||||| |||||    
T  22620497 ccctttcttcttttacaaacccttcagctatccattgccgaatcaatctctttgaatcaactttataatcttctggatataatccaaaatacaataaaca 22620596  T
Q  384 tgatctaagatagtaaggcaaatcatcata 413  Q
    |||| ||||||    |||||||||||||||    
T  22620597 tgatttaagatgaagaggcaaatcatcata 22620626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 165 - 427
Target Start/End: Complemental strand, 21946608 - 21946346
Alignment:
Q  165 tagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgca 264  Q
    |||||||||||||||||||| |||| |||| ||||||||  |||  ||||| | ||| ||||  |||||||  |||||||||| ||||||   ||| ||     
T  21946608 tagatcatgaacacgacaacctttagctttaccatcaattctaagtgaagatacttgaaccaggcttctatggatcaactctgttaaatatccttctgcc 21946509  T
Q  265 acttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactgacgaagtagtatcttagactcaatttcacagtcttctgggtata 364  Q
    |||||||| || |||||||| |||||||| ||||||||||||||||||||||| || ||||  | | |||| || | || |||| | |||||||| ||||    
T  21946508 acttcttccaaagtcttccctctttcctccttcacaaacccttcagctatccattgtcgaatcactctcttcgatttaacttcataatcttctggatata 21946409  T
Q  365 atccaaaatacaacaaacatgatctaagatagtaaggcaaatcatcataactcaaacttaaaa 427  Q
     ||||||||| ||||| |||||  | |||||| ||||||||||||||||||| ||||||||||    
T  21946408 ctccaaaataaaacaagcatgacttgagatagcaaggcaaatcatcataacttaaacttaaaa 21946346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 428
Target Start/End: Complemental strand, 22116067 - 22115806
Alignment:
Q  167 gatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaac 266  Q
    |||||||||||||||||| |||| |||| ||||||||  ||| |||||| | ||| |||| ||||||||  |||||||||| || |||    || || ||    
T  22116067 gatcatgaacacgacaacctttagctttgccatcaattctaagcgaagatacttgaaccatacttctatggatcaactctgttatatatccctctgccac 22115968  T
Q  267 ttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactgacgaagtagtatcttagactcaatttcacagtcttctgggtataat 366  Q
    ||| || |  ||||| ||||||||||| ||||||||||||||||||||||| || |||   | | |||| || | || |||| | ||||||||||||| |    
T  22115967 ttcatccatagtctttcccctttcctccttcacaaacccttcagctatccattgtcgagtgattctctttgatttaacttcaaaatcttctgggtatact 22115868  T
Q  367 ccaaaatacaacaaacatgatctaagatagtaaggcaaatcatcataactcaaacttaaaat 428  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||||| |||| ||||||    
T  22115867 ccaaaatacaacaaacatgacttgagatagtaaggcaaatcatcataacttaaacataaaat 22115806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 165 - 428
Target Start/End: Complemental strand, 22053690 - 22053427
Alignment:
Q  165 tagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgca 264  Q
    |||||||||||||||||| | |||| |||| ||||||||  |||  ||||| | ||| ||||  |||||||  |||||||||||||||||   ||| ||     
T  22053690 tagatcatgaacacgacatcctttagctttgccatcaattctaagtgaagatacttgaaccaggcttctatggatcaactctgataaatatccttctgcc 22053591  T
Q  265 acttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactgacgaagtagtatcttagactcaatttcacagtcttctgggtata 364  Q
    |||||||| || ||||||||| ||||||| |||||||||||||| |||||||| || ||||  | |  ||| || | || |||| | |||||||| ||||    
T  22053590 acttcttccaaagtcttccccttttcctccttcacaaacccttctgctatccattgtcgaatcactcgctttgaattaacttcataatcttctggatata 22053491  T
Q  365 atccaaaatacaacaaacatgatctaagatagtaaggcaaatcatcataactcaaacttaaaat 428  Q
     ||||||||||||||| |||||    |||||||||||||||||||||||||| |||||||||||    
T  22053490 ctccaaaatacaacaagcatgactcgagatagtaaggcaaatcatcataacttaaacttaaaat 22053427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 106 - 428
Target Start/End: Complemental strand, 22105751 - 22105429
Alignment:
Q  106 tcactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatat 205  Q
    |||||||||||   ||||||| | ||||||| |   ||| ||| ||||||  |||||| |||||||||||||||||||| ||||  ||| ||||||||      
T  22105751 tcactaatatgcttgcaaaaattaaaatcctcattctttgcaaggatcatatcacgtattagatcatgaacacgacaacctttagttttgccatcaattc 22105652  T
Q  206 taatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaaccc 305  Q
    ||| ||| || | ||| ||||  |||||||  |||||||||| ||||||   ||| || ||||| || || ||||||||| ||||||| |||||||||||    
T  22105651 taagcgaggatacttgaaccaggcttctatggatcaactctgttaaatatccttctgccacttcgtccaaagtcttccccttttcctccttcacaaaccc 22105552  T
Q  306 ttcagctatccactgacgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaacatgatctaagatagtaaggcaaa 405  Q
    |||||||||||| || |||   | | |||| || | || |||| | |||||||| |||| |||||| |||||||| |||||  | |||||||||||||||    
T  22105551 ttcagctatccattgtcgagtcactctcttcgatttaacttcataatcttctggatatactccaaagtacaacaagcatgacttgagatagtaaggcaaa 22105452  T
Q  406 tcatcataactcaaacttaaaat 428  Q
    ||||||||||| |||||||||||    
T  22105451 tcatcataacttaaacttaaaat 22105429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 106 - 416
Target Start/End: Complemental strand, 22180460 - 22180150
Alignment:
Q  106 tcactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatat 205  Q
    |||||||||||   ||||||| | ||||||| |  ||||| || ||||||  |||||| |||||||||||||||||||| |||| |||| ||||||||      
T  22180460 tcactaatatgcttgcaaaaattaaaatcctcatttttttgaaggatcatatcacgtattagatcatgaacacgacaacctttagctttgccatcaattc 22180361  T
Q  206 taatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaaccc 305  Q
    ||| |||||| | ||| ||||  |||||||  |||||||||| || |||    || || |||||||| | ||| || ||| ||||||| |||||||||||    
T  22180360 taagcgaagatacttgaaccaggcttctatggatcaactctgttagatatccctctgccacttcttccattgtttttcccttttcctccttcacaaaccc 22180261  T
Q  306 ttcagctatccactgacgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaacatgatctaagatagtaaggcaaa 405  Q
    |||||||||||| |  |||  || | |||| || | || |||| | || ||||| |||| |||||||||||||||||||||  | |||||||||||||||    
T  22180260 ttcagctatccattttcgagttactctcttcgatttaacttcataatcctctggatatactccaaaatacaacaaacatgacttgagatagtaaggcaaa 22180161  T
Q  406 tcatcataact 416  Q
    |||||||||||    
T  22180160 tcatcataact 22180150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 120 - 428
Target Start/End: Complemental strand, 21938182 - 21937874
Alignment:
Q  120 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 219  Q
    ||||||| | ||||||| |  |||||||| ||||||  |||||| |||||||||||||||||||| |||| |||| ||||||||  |||  || || | |    
T  21938182 gcaaaaattaaaatcctcatctttttcaaggatcatatcacgtattagatcatgaacacgacaacctttagctttgccatcaattctaagtgaggatact 21938083  T
Q  220 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccact 319  Q
    || ||||  |||||||  |||||||||| || |||    || || |||||||| |  ||||| ||| ||||||| |||||||| |||||||||||||| |    
T  21938082 tgaaccaggcttctatgtatcaactctgttagatatccctctgccacttcttccatagtctttcccttttcctccttcacaaatccttcagctatccatt 21937983  T
Q  320 gacgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcatcataactcaa 419  Q
    | ||||  | | |||| |    ||||||| | |||||||| |||| ||||||||||||||| |||||  | |||||||||||||||||||||||||| ||    
T  21937982 gtcgaatgactctctttggtctaatttcaaaatcttctggatatactccaaaatacaacaagcatgacttgagatagtaaggcaaatcatcataacttaa 21937883  T
Q  420 acttaaaat 428  Q
    |||||||||    
T  21937882 acttaaaat 21937874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 107 - 410
Target Start/End: Original strand, 22656490 - 22656793
Alignment:
Q  107 cactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatatt 206  Q
    ||||||||||   ||| ||||||||||||| | | ||||||| |||||||| | ||| || |||||| |||| ||||||||||  |||||| |||||  |    
T  22656490 cactaatatgcttgcagaaacttaaatcctcacacttttcaaggatcatcatatgtattaaatcatggacacaacaacttttagtttttccgtcaattct 22656589  T
Q  207 aatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaaccct 306  Q
    ||  || || | ||| ||||||| ||    ||||||||||| ||||||   ||| ||||||||||| || || ||||||||||| ||||||||||| |||    
T  22656590 aactgaggatacttgtaccaaacatcggcgaatcaactctgttaaatatccttctgcaacttcttccaaagttttccccctttcttctttcacaaaacct 22656689  T
Q  307 tcagctatccactgacgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaacatgatctaagatagtaaggcaaat 406  Q
    ||||||||||| || || |  | | |||| || |||| |||| | |||||||| |||| |||||||||||||||||||||  |||||||  |||||||||    
T  22656690 tcagctatccattgccgtatcactctctttgattcaacttcataatcttctggatatattccaaaatacaacaaacatgacttaagataaaaaggcaaat 22656789  T
Q  407 catc 410  Q
    ||||    
T  22656790 catc 22656793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 165 - 428
Target Start/End: Complemental strand, 21931405 - 21931142
Alignment:
Q  165 tagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgca 264  Q
    |||||||||||||||||||| |||| |||| ||||||||  |||  ||||| | ||| || |  |||||||  |||||||||| ||||||   ||| ||     
T  21931405 tagatcatgaacacgacaacctttagctttgccatcaattctaagtgaagatacttgaacgaggcttctatggatcaactctgttaaatatccttctgcc 21931306  T
Q  265 acttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactgacgaagtagtatcttagactcaatttcacagtcttctgggtata 364  Q
    |||||||| || ||| ||||| ||||||| || |||||||||||||||||||| || |||   | | |||| || | || |||| | |||||||| ||||    
T  21931305 acttcttccaaagtcatccccttttcctccttgacaaacccttcagctatccattgtcgagtcactctctttgatttaacttcataatcttctggatata 21931206  T
Q  365 atccaaaatacaacaaacatgatctaagatagtaaggcaaatcatcataactcaaacttaaaat 428  Q
     |||||||||||| || ||||   | |||||||||||||||||||||||||| |||||||||||    
T  21931205 ctccaaaatacaagaagcatggcttgagatagtaaggcaaatcatcataacttaaacttaaaat 21931142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 106 - 428
Target Start/End: Complemental strand, 22035560 - 22035238
Alignment:
Q  106 tcactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatat 205  Q
    |||||||||||   ||||||| | |||||||||  ||||| || ||||||  | |||| |||||||||||||||||||| |||| |||| ||||||||      
T  22035560 tcactaatatgcttgcaaaaattaaaatccttatttttttgaaggatcatatcgcgtattagatcatgaacacgacaacctttagctttgccatcaattc 22035461  T
Q  206 taatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaaccc 305  Q
    ||| ||| || | ||| ||||  |||||||  |||||||||  || |||    || || | |||||| | |||||| ||| ||||||| |||| ||||||    
T  22035460 taagcgaggatacttgaaccaggcttctatggatcaactctattagatatccctcagccagttcttccattgtctttcccttttcctccttcataaaccc 22035361  T
Q  306 ttcagctatccactgacgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaacatgatctaagatagtaaggcaaa 405  Q
    |||||||||||| || |||   | | |||| || | || |||| | |||||||| |||| ||||||||||||||| ||||   | |||||||||||||||    
T  22035360 ttcagctatccattgtcgagtcactctctttgatttaacttcaaaatcttctggatatactccaaaatacaacaagcatggcttgagatagtaaggcaaa 22035261  T
Q  406 tcatcataactcaaacttaaaat 428  Q
    ||||||||||| |||||||||||    
T  22035260 tcatcataacttaaacttaaaat 22035238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 103 - 409
Target Start/End: Original strand, 22647604 - 22647910
Alignment:
Q  103 tcttcactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaa 202  Q
    ||||||||||||||   ||| ||||||| ||||| |   ||||||| |||||||| | |||  |||||||||||||  |||||||||  |||||||||||    
T  22647604 tcttcactaatatgcttgcagaaacttatatcctcactcttttcaaggatcatcatatgtatcagatcatgaacacagcaacttttagtttttccatcaa 22647703  T
Q  203 tattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaa 302  Q
    |  |||  ||||| | ||| |||||||||||||  |||||||| | ||||||   ||| ||||||||||| || || | ||||||||| |||||||||||    
T  22647704 ttctaactgaagatacttgaaccaaacttctatggatcaactcagttaaatatcgttctgcaacttcttccaaggtataccccctttcttctttcacaaa 22647803  T
Q  303 cccttcagctatccactgacgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaacatgatctaagatagtaaggc 402  Q
     |||||||||| |||||| ||||  ||| || | ||  ||| |||| | ||||| || || | ||||||||| || ||||||| | |||||||| |||||    
T  22647804 tccttcagctacccactgtcgaaacagtctcctcgatccaacttcataatcttcgggatacattccaaaatataagaaacatggtttaagatagaaaggc 22647903  T
Q  403 aaatcat 409  Q
    |||||||    
T  22647904 aaatcat 22647910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 120 - 317
Target Start/End: Original strand, 22467400 - 22467597
Alignment:
Q  120 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 219  Q
    ||||||||||||||||| | |||| |||| ||||||  || | | |||||||||||||||||||||||| ||| ||||||||||| | || |||   | |    
T  22467400 gcaaaaacttaaatcctcatatttatcaaggatcattgcatgcactagatcatgaacacgacaactttttactcttccatcaatacttattgaaactact 22467499  T
Q  220 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatcca 317  Q
    ||||||||||||||||  |||||||||  ||||||   ||| ||||| ||||| |||||| ||||||| || || ||||||||||||||||| |||||    
T  22467500 tgcaccaaacttctatggatcaactctattaaatatccttcagcaacctcttccaatgtcctccccctgtcttccttcacaaacccttcagcaatcca 22467597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 160 - 428
Target Start/End: Complemental strand, 22028989 - 22028721
Alignment:
Q  160 cgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagttt 259  Q
    |||| |||||||||||||||||| | |||| |||| |||||||| ||||  ||||| | ||||||||  |||||||| |||||||||   | |||    |    
T  22028989 cgtattagatcatgaacacgacatcctttagctttgccatcaattttaagtgaagatacttgcaccaggcttctattgatcaactctatgagatatccct 22028890  T
Q  260 ccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactgacgaagtagtatcttagactcaatttcacagtcttctgg 359  Q
    | || |||||||  || |||||| || |||||||  | |||||||||||||||||||| || ||||  | | |||| || | || |||| | ||||||||    
T  22028889 ctgccacttcttgcaaagtcttctccttttcctcccttacaaacccttcagctatccattgtcgaatcactctctttgatttaacttcataatcttctgg 22028790  T
Q  360 gtataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcatcataactcaaacttaaaat 428  Q
     |||| ||||||||||||||| ||||   | |||||||||||||||||||||||||| |||||||||||    
T  22028789 atatactccaaaatacaacaagcatggcttgagatagtaaggcaaatcatcataacttaaacttaaaat 22028721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 160 - 428
Target Start/End: Complemental strand, 22187977 - 22187709
Alignment:
Q  160 cgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagttt 259  Q
    |||| |||||||||||||||||| | |||| |||| |||||||| ||||  ||||| | ||||||||  |||||||| |||||||||   | |||    |    
T  22187977 cgtattagatcatgaacacgacatcctttagctttgccatcaattttaagtgaagatacttgcaccaggcttctattgatcaactctatgagatatccct 22187878  T
Q  260 ccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactgacgaagtagtatcttagactcaatttcacagtcttctgg 359  Q
    | || |||||||  || |||||| || |||||||  | |||||||||||||||||||| || ||||  | | |||| || | || |||| | ||||||||    
T  22187877 ctgccacttcttgcaaagtcttctccttttcctcccttacaaacccttcagctatccattgtcgaatcactctctttgatttaacttcataatcttctgg 22187778  T
Q  360 gtataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcatcataactcaaacttaaaat 428  Q
     |||| ||||||||||||||| ||||   | |||||||||||||||||||||||||| |||||||||||    
T  22187777 atatactccaaaatacaacaagcatggcttgagatagtaaggcaaatcatcataacttaaacttaaaat 22187709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 120 - 317
Target Start/End: Original strand, 22634955 - 22635152
Alignment:
Q  120 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 219  Q
    |||||||||||||||||||||||| |||| ||||||  || | | |||||||||||| || |||||||| ||| ||||||||||| || | |||   | |    
T  22634955 gcaaaaacttaaatccttaaatttgtcaaggatcatttcatgcactagatcatgaacgcggcaactttttactcttccatcaatactagttgaaactact 22635054  T
Q  220 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatcca 317  Q
    ||||||||||||||||  |||||||||  ||||||   ||| ||||| ||||| |||||| | ||||| || |||||||| ||||||||||| |||||    
T  22635055 tgcaccaaacttctatggatcaactctactaaatatccttctgcaacctcttcaaatgtccttcccctgtcttctttcacgaacccttcagcaatcca 22635152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 428
Target Start/End: Original strand, 18966566 - 18966732
Alignment:
Q  262 gcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactgacgaagtagtatcttagactcaatttcacagtcttctgggt 361  Q
    |||| |||||| || |||||||| |||||||| ||||||||||||||||||||||| || |||| || |  |||  | | ||||||| | |||| |||      
T  18966566 gcaatttcttccaaagtcttcccgctttcctccttcacaaacccttcagctatccattgtcgaattactcgctttaaattaatttcataatcttatggac 18966665  T
Q  362 ataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcatcataactcaaacttaaaat 428  Q
    ||| |||||||||| |||| |||||  | ||||||||||||||||||||||| || |||| ||||||    
T  18966666 atactccaaaatactacaagcatgacttgagatagtaaggcaaatcatcatagcttaaacctaaaat 18966732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 322
Target Start/End: Original strand, 22430620 - 22430821
Alignment:
Q  121 caaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagattt 220  Q
    ||||| |||||||||| | |||||| || ||||||  || | | |||||||||||||||||||||| | ||| ||||||||||| | || |||   | ||    
T  22430620 caaaagcttaaatcctcatattttttaaggatcatttcatgcactagatcatgaacacgacaacttcttactcttccatcaatacttattgaatctactt 22430719  T
Q  221 gcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactg 320  Q
    |||||||||||||||  |||||||||  ||||||   ||| ||||| ||||  |||||| | ||| |||  |||||||||||||||||||| ||||| ||    
T  22430720 gcaccaaacttctatggatcaactctattaaatatccttctgcaacctctttcaatgtccttcccgttttttctttcacaaacccttcagcaatccattg 22430819  T
Q  321 ac 322  Q
    ||    
T  22430820 ac 22430821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 317
Target Start/End: Original strand, 22436080 - 22436277
Alignment:
Q  120 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 219  Q
    ||||||||||||||||| | |||| |||| ||||||  || | | || ||||||||||||||||||||| ||| ||||||||||| | || |||   |      
T  22436080 gcaaaaacttaaatcctcatatttctcaaggatcattgcatgcactaaatcatgaacacgacaactttttactcttccatcaatacttattgaaactaca 22436179  T
Q  220 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatcca 317  Q
    ||||||||||||||||| | |||||||  ||||||   ||  ||||  ||||| |||||| | ||||| || |||||||| ||||||||||| |||||    
T  22436180 tgcaccaaacttctattgaccaactctattaaatatccttttgcaatatcttccaatgtccttcccctctcttctttcacgaacccttcagcaatcca 22436277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 37930308 - 37930393
Alignment:
Q  120 gcaaaaacttaaatccttaaatttttcaaag-atcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaata 204  Q
    |||||||||||||||| ||||||| |||||| |||||  || | | |||||||||||||||||||||||| ||| |||||||||||    
T  37930308 gcaaaaacttaaatccataaatttgtcaaaggatcatttcatgcactagatcatgaacacgacaactttttactcttccatcaata 37930393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 409
Target Start/End: Original strand, 22357451 - 22357740
Alignment:
Q  120 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 219  Q
    |||||| ||||||| ||||  |||||||| ||||||  || | | |||||||||||||||||||| ||| ||| ||||||||||| | || |||   | |    
T  22357451 gcaaaagcttaaatgcttatgtttttcaaggatcatttcatgcactagatcatgaacacgacaacgttttactcttccatcaatactgattgaatctact 22357550  T
Q  220 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatg-tcttccccctttcctctttcacaaacccttcagctatccac 318  Q
    ||||||||||||||||  || ||||||  ||||||   ||| ||||| ||||| |  | |||| ||||  |  | |||||||||||||||||| |||||     
T  22357551 tgcaccaaacttctatgtattaactcttttaaatatccttctgcaacctcttccatcgttctttcccc-atattgtttcacaaacccttcagcaatccat 22357649  T
Q  319 tgacgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcat 409  Q
    || |||   | | |||| || | || || | ||||||| || ||||||||||||||||| ||||||||  | || ||||||||||||||||    
T  22357650 tgtcgagtcaatgtctttgaatgaactttatagtcttcaggatataatccaaaatacaagaaacatgacttgaggtagtaaggcaaatcat 22357740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 324
Target Start/End: Original strand, 22353261 - 22353465
Alignment:
Q  120 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 219  Q
    ||||||||||||||||| | |||||  || ||||||  || | | |||||| ||||||||||||||||| ||| ||||||||||| | |  |||   | |    
T  22353261 gcaaaaacttaaatcctcatattttctaaggatcatttcatgcactagatcgtgaacacgacaactttttactcttccatcaatactgactgaatctact 22353360  T
Q  220 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccact 319  Q
    ||||||||||||||||  || ||||||  ||||||   ||| ||||| ||||| | |||| | ||||  |  |||||||||||||| ||||| ||||| |    
T  22353361 tgcaccaaacttctatggattaactcttttaaatatccttctgcaacctcttccattgtccttcccccgtattctttcacaaacccctcagcaatccatt 22353460  T
Q  320 gacga 324  Q
    |||||    
T  22353461 gacga 22353465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 324
Target Start/End: Original strand, 22367474 - 22367577
Alignment:
Q  221 gcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactg 320  Q
    ||||||||||||||   |||||||||  |||||    ||| ||||| ||||| |||||| | |||||||| |||||||||||||||||||| ||||| ||    
T  22367474 gcaccaaacttctacggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttcttctttcacaaacccttcagcaatccattg 22367573  T
Q  321 acga 324  Q
    ||||    
T  22367574 acga 22367577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 386
Target Start/End: Original strand, 22442191 - 22442457
Alignment:
Q  120 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 219  Q
    |||||| ||||||| ||||  |||||||| ||||||  || | | ||||||||||||||| |||||||| ||| ||||||||||| |  | |||   | |    
T  22442191 gcaaaagcttaaatgcttatgtttttcaaggatcatttcatgcactagatcatgaacacggcaactttttactcttccatcaatactggttgaaactact 22442290  T
Q  220 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccact 319  Q
    |||||||||||||||   || ||| ||  ||||||   ||| ||||| | ||| |||||| |  |||  |  |||||||||||||||||||||||||| |    
T  22442291 tgcaccaaacttctacagattaacacttttaaatatccttctgcaaccttttccaatgtcctttccccatattctttcacaaacccttcagctatccatt 22442390  T
Q  320 gacgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaacatga 386  Q
    |||||   | | |||| ||   |  |||| ||||||| || ||||||||||||||||| ||||||||    
T  22442391 gacgagtcaatgtctttgaacaagcttcatagtcttcgggatataatccaaaatacaagaaacatga 22442457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 386
Target Start/End: Original strand, 22457984 - 22458204
Alignment:
Q  166 agatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaa 265  Q
    ||||||||||||| |||||||||  || ||||||||||| |||| |||   | ||||||||||| |||| | ||||| |||| ||||||    || ||||    
T  22457984 agatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaa 22458083  T
Q  266 cttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactgacgaagtagtatcttagactcaatttcacagtcttctgggtataa 365  Q
    | ||||| ||||| ||  || | || ||||||||||| |||||||| ||||| || ||||  ||||| || |    || |  |||  |||| || |||||    
T  22458084 catcttccaatgtttttaccatatcatctttcacaaatccttcagccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataa 22458183  T
Q  366 tccaaaatacaacaaacatga 386  Q
    |||||||||||||||||||||    
T  22458184 tccaaaatacaacaaacatga 22458204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 386
Target Start/End: Original strand, 22480965 - 22481185
Alignment:
Q  166 agatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaa 265  Q
    ||||||||||||| |||||||||  || ||||||||||| |||| |||   | ||||||||||| |||| | ||||| |||| ||||||    || ||||    
T  22480965 agatcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaa 22481064  T
Q  266 cttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactgacgaagtagtatcttagactcaatttcacagtcttctgggtataa 365  Q
    | ||||| ||||| ||  || | || ||||||||||| |||||||| ||||| || ||||  ||||| || |    || |  |||  |||| || |||||    
T  22481065 catcttccaatgtttttaccatatcatctttcacaaatccttcagccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataa 22481164  T
Q  366 tccaaaatacaacaaacatga 386  Q
    |||||||||||||||||||||    
T  22481165 tccaaaatacaacaaacatga 22481185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 22629892 - 22629971
Alignment:
Q  120 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccat 199  Q
    ||||||||||||||||| | |||| |||| ||||||  || | | ||||||||| |||||||||||||| ||| ||||||    
T  22629892 gcaaaaacttaaatcctcatatttctcaaggatcattgcatgcactagatcatgtacacgacaactttttactcttccat 22629971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 120 - 413
Target Start/End: Complemental strand, 34990246 - 34989953
Alignment:
Q  120 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 219  Q
    ||||||||||||||||| | | ||||||| |||||||| | |||  ||||||||||||| ||||||| ||  ||||||||||||  |||  || || | |    
T  34990246 gcaaaaacttaaatcctcacacttttcaaggatcatcatatgtatcagatcatgaacacaacaacttctagtttttccatcaatgctaactgaggatact 34990147  T
Q  220 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccact 319  Q
    |||||||||||||||  ||||||||||| ||||||  ||||  |||||||||| || |||||||| |||||||||||||||||||||||||||||||| |    
T  34990146 tgcaccaaacttctacgaatcaactctgttaaatatctttcttcaacttcttccaaagtcttcccactttcctctttcacaaacccttcagctatccatt 34990047  T
Q  320 gacgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcatcata 413  Q
    |  | |  | | |||| || | || |||| | |||||||| || | ||||||||| |||||||||||| |||||||  ||||||||||||||||    
T  34990046 gttgtatcattctctttgatttaacttcataatcttctggatacattccaaaatataacaaacatgatttaagataaaaaggcaaatcatcata 34989953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 122 - 428
Target Start/End: Original strand, 2304925 - 2305230
Alignment:
Q  122 aaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatttg 221  Q
    ||||||||||||||| | | ||||| | || ||| | |||||  ||||||||||||| ||||||||||  ||||||||||||  |||  || || | |||    
T  2304925 aaaaacttaaatcctcacacttttctaggaacattatacgtatcagatcatgaacacaacaacttttagattttccatcaatgctaactgaggatacttg 2305024  T
Q  222 caccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccactga 321  Q
    ||||||||||| |  ||||||||||||||||||   ||| ||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||     
T  2305025 caccaaacttcgacgaatcaactctgataaatatccttctgcaacttcttccaaagtcttcccactttcctccttcacaaacccttcagctatccactgt 2305124  T
Q  322 cgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcatcataactcaaac 421  Q
    ||||  | | |||| || | || |||| | |||||||| || | |||||||||  ||||||| ||| |||||||  ||||||||||| |||| || ||||    
T  2305125 cgaatcactctctttgatttaacttcataatcttctggatacattccaaaata-tacaaacacgatttaagataaaaaggcaaatcaccatagctaaaac 2305223  T
Q  422 ttaaaat 428  Q
     ||||||    
T  2305224 ctaaaat 2305230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 120 - 428
Target Start/End: Complemental strand, 34976400 - 34976092
Alignment:
Q  120 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 219  Q
    ||||||||||||||||| | | ||||||| |||||||| |||||  ||||||||||||| ||||||||||   |||||||||||  |||  || || | |    
T  34976400 gcaaaaacttaaatcctcacacttttcaaggatcatcatacgtatcagatcatgaacacaacaacttttaggctttccatcaattctaactgaggatact 34976301  T
Q  220 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccact 319  Q
    ||||||||||||| |  ||||||||||| ||||||   ||  ||||||||||| || ||||| || |||||||| |||||||||||||||||||||||||    
T  34976300 tgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaacttcttccaaagtcttgccactttcctccttcacaaacccttcagctatccact 34976201  T
Q  320 gacgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcatcataactcaa 419  Q
    |  |||  | | |||| || | || |||| |  ||| ||| || | ||||||||| |||||||| ||| |||||||  |||||| ||||||||| || ||    
T  34976200 gtagaatcactctctttgatttaacttcataaccttttggatacattccaaaatataacaaacacgatttaagataacaaggcagatcatcatagctaaa 34976101  T
Q  420 acttaaaat 428  Q
    || ||||||    
T  34976100 acctaaaat 34976092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 120 - 428
Target Start/End: Complemental strand, 34983511 - 34983203
Alignment:
Q  120 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 219  Q
    ||||||||||||||||| | | ||||||| |||||||| |||||  ||||||||||||| ||||||||||   |||||||||||  |||  || || | |    
T  34983511 gcaaaaacttaaatcctcacacttttcaaggatcatcatacgtatcagatcatgaacacaacaacttttaggctttccatcaattctaactgaggatact 34983412  T
Q  220 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccact 319  Q
    ||||||||||||| |  ||||||||||| ||||||   ||  ||||||||||| || ||||| || |||||||| |||||||||||||||||||||||||    
T  34983411 tgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaacttcttccaaagtcttgccactttcctccttcacaaacccttcagctatccact 34983312  T
Q  320 gacgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcatcataactcaa 419  Q
    |  |||  | | |||| || | || |||| |  ||| ||| || | ||||||||| |||||||| ||| |||||||  |||||| ||||||||| || ||    
T  34983311 gtagaatcactctctttgatttaacttcataaccttttggatacattccaaaatataacaaacacgatttaagataacaaggcagatcatcatagctaaa 34983212  T
Q  420 acttaaaat 428  Q
    || ||||||    
T  34983211 acctaaaat 34983203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 120 - 395
Target Start/End: Complemental strand, 40580963 - 40580688
Alignment:
Q  120 gcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaatattaatcgaagagatt 219  Q
    |||||||||||| |||| | | ||||||  |||||||| |||||  | ||| ||||||  ||||||||||  ||||||||||||  |||| || || | |    
T  40580963 gcaaaaacttaattcctcacacttttcatggatcatcatacgtatcaaatcgtgaacaaaacaacttttagtttttccatcaattctaattgaggatact 40580864  T
Q  220 tgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtcttccccctttcctctttcacaaacccttcagctatccact 319  Q
    ||||||||||| | |  ||||||||| | ||||||   ||| ||||||||||| || ||||| || |||||||| |||||||||||||||||||||||||    
T  40580863 tgcaccaaactacgacgaatcaactcagttaaatatacttcagcaacttcttccaaagtctttccactttcctccttcacaaacccttcagctatccact 40580764  T
Q  320 gacgaagtagtatcttagactcaatttcacagtcttctgggtataatccaaaatacaacaaacatgatctaagata 395  Q
    |  |||  | | |||| || | || |||| | |||||||| || | ||||||||| |||||||| ||| |||||||    
T  40580763 gtagaatcactctctttgatttaacttcataatcttctggatacattccaaaatataacaaacaggatttaagata 40580688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 318
Target Start/End: Original strand, 872144 - 872360
Alignment:
Q  103 tcttcactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaa 202  Q
    ||||||||||||||   ||||||| ||||||||| ||||||||||| |||||   || ||| |||||||||||||||||||  |||| |||| |||||||    
T  872144 tcttcactaatatgcttgcaaaaatttaaatcctcaaatttttcaaggatcaaatcatgtagtagatcatgaacacgacaaactttagctttaccatcaa 872243  T
Q  203 tattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtc-ttccccctttcctctttcacaa 301  Q
        ||  || || | |||||||||   |||||  || ||||| | ||||||   ||| |||| ||||||  | ||| |||| ||||||||| |||||||    
T  872244 ctccaagtgatgatacttgcaccaagaatctatggataaactcggctaaatatccttctgcaaattcttcccaagtctttcctcctttcctccttcacaa 872343  T
Q  302 acccttcagctatccac 318  Q
    |||||||||||||||||    
T  872344 acccttcagctatccac 872360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 318
Target Start/End: Original strand, 1233421 - 1233637
Alignment:
Q  103 tcttcactaatatggcagcaaaaacttaaatccttaaatttttcaaagatcatcacacgtaatagatcatgaacacgacaacttttaacttttccatcaa 202  Q
    ||||||||||||||   ||||||| ||||||||| ||||||||||| |||||   || ||| |||||||||||||||||||  |||| |||| |||||||    
T  1233421 tcttcactaatatgcttgcaaaaatttaaatcctcaaatttttcaaggatcaaatcatgtagtagatcatgaacacgacaaactttagctttaccatcaa 1233520  T
Q  203 tattaatcgaagagatttgcaccaaacttctattaatcaactctgataaataagtttccgcaacttcttctaatgtc-ttccccctttcctctttcacaa 301  Q
        ||  || || | |||||||||   |||||  || ||||| | ||||||   ||| |||| ||||||  | ||| |||| ||||||||| |||||||    
T  1233521 ctccaagtgatgatacttgcaccaagaatctatggataaactcggctaaatatccttctgcaaattcttcccaagtctttcctcctttcctccttcacaa 1233620  T
Q  302 acccttcagctatccac 318  Q
    |||||||||||||||||    
T  1233621 acccttcagctatccac 1233637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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