View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18277_low_10 (Length: 370)
Name: NF18277_low_10
Description: NF18277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18277_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 2 - 354
Target Start/End: Complemental strand, 30262457 - 30262105
Alignment:
| Q |
2 |
gaggaggaggatgatggagttagagaagaaggtgatgaattgggtgtggagtttgaagaagatggaatgggatactccaagttgagggtaagagatgata |
101 |
Q |
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| T |
30262457 |
gaggaggaggatgatggagttagagaagaaggtgatgaattgggtgtggagtttgaagaagatggaatgggatactccaagttgagggtaagagatgata |
30262358 |
T |
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| Q |
102 |
ttattgatcatgtgtttactgaggaagtggatagccctattcctacttgtgaaagggatgtggagtcaattggagtcaatttcaatgctagagacagaag |
201 |
Q |
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| T |
30262357 |
ttattgatcatgtgtttactgaggaagtggatagccctattcctacttatgaaagggatgtggagtcaattggagtcaatttcaatgctagagacagaag |
30262258 |
T |
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| Q |
202 |
tgtttatgttcattctgtgctgaatccggttgaaaatatggctcagtggaaagttgttaaagctaaaagaacaccacgatcaaggcctcagaaagagaat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30262257 |
tgtttatgttcattctgtgctgaatccggttgaaaatatggctcagtggaaagttgttaaagctaaaagaacaccacgatcaaggcctcagaaagagaat |
30262158 |
T |
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| Q |
302 |
tttgttagttccaaccatgaatcagaggtttcatttggtgtcaaggaaatttt |
354 |
Q |
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| T |
30262157 |
tttgttagttccaaccatgaatcagaggtttcatttggtgtcaaggaaatttt |
30262105 |
T |
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