View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18277_low_11 (Length: 361)
Name: NF18277_low_11
Description: NF18277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18277_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 54217884 - 54218217
Alignment:
| Q |
18 |
ctatgcactcgtcacacaggtacatttcatttttaaggtcatgttaacaagtacccttataatacttgttaagcaagcaaagtatagaaactttgtatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54217884 |
ctatgcactcgtcacacaggtacatttcatttttaaggtcatgttaacaagtacccttatgatacttgttaagcaagcaaagtatagaaactttgtattg |
54217983 |
T |
|
| Q |
118 |
aaaaatgaaatgaattgatgaaggagaatattaatcttgttgttatgatttaaaaatatcagatgggatcaacgatgaagcggtcaatatttgacgagca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54217984 |
aaaaatgaaatgaattgatgaaggagaatattaatcttgttgttatgatttaaaaatatcagatgggatcaacgatgaagcggtcaatatttgacgagca |
54218083 |
T |
|
| Q |
218 |
aacatcaaaggcattgcaaaactggcgtaaaaatgcaatgcataagaaaccatcaaaaggacgctcgaaggaaactcgaaaattaggaggaggagaagcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
54218084 |
aacatcaaaggcattgcaaaactggcgtaaaaatgcaatgcataagaaaccatcaaaaggacgctcgaaggaaactcgaacattaggaggaggagaagcg |
54218183 |
T |
|
| Q |
318 |
gggtcacctgtgcattcgccgttacatgatgatg |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
54218184 |
gggtcacctgtgcattcgccgttacatgatgatg |
54218217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University