View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18277_low_12 (Length: 356)
Name: NF18277_low_12
Description: NF18277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18277_low_12 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 341
Target Start/End: Complemental strand, 15884845 - 15884508
Alignment:
| Q |
4 |
tagtatttccatggccaaaattttaggcctagaagcaaatattacatcatgggttttaagtacttccttagcatagtctggtgaggaaacaacaatggca |
103 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15884845 |
tagtatttcaatggccaaaattttaggcctagatgcaaatattacatcatgggttttaagtacctccttagcatagtctggtgaggaaacaacaatggca |
15884746 |
T |
|
| Q |
104 |
aagatctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtc |
203 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||||||||| |
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| T |
15884745 |
aagatctctcctagttgtagttgcattaagggtccatgtattttggccaagtctcttaatttttgatgtggtgtagaggtaactagatgatgtatgtgtc |
15884646 |
T |
|
| Q |
204 |
ctataataggtagcctccatggtcctggaggtaggtttggagctgagccttttt---------tcttccctattttcagtgccacaagcatgacaaggaa |
294 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||| ||||||||||| |||||| |||||||||||| |||||||||| ||||| |
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| T |
15884645 |
ctataataggtagcttccatggtcctgggggtaggtttggagatgagccttttttcttgagattcttccttattttcagtgctacaagcatgaagaggaa |
15884546 |
T |
|
| Q |
295 |
aaaggtaacaaaggatagtagggcaaatatttgggaatccatggaga |
341 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||||| |
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| T |
15884545 |
---------aaaggatagtaaggcaaatattttggaatccatggaga |
15884508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 12638221 - 12638460
Alignment:
| Q |
22 |
aattttaggcctagaagcaaatattacatcatgggttttaagtacttccttagcatagtctggtgaggaaacaacaatggcaaagatctctcctagttgt |
121 |
Q |
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|||||||||| |||| |||||||| | |||||| ||||| | ||| ||| ||||||| |||||||||||||||||||| ||| |||||||||| |||||| |
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| T |
12638221 |
aattttaggcttagatgcaaatatgatatcatgagttttcattacctccctagcatactctggtgaggaaacaacaattgcagagatctctccaagttgt |
12638320 |
T |
|
| Q |
122 |
agttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctataataggtagcctcc |
221 |
Q |
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| |||||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
12638321 |
aagtgcatcaagggtccatacactttggccaaatctcttaatttttgatgtggtgtagaggaaacaagatggtgtatgtgtcctataataggcagcttcc |
12638420 |
T |
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| Q |
222 |
atggtcctggaggtaggtttggagctgagccttttttctt |
261 |
Q |
| |
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|||||||||| ||||| ||||||||||| | ||||||||| |
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| T |
12638421 |
atggtcctgggggtagatttggagctgaactttttttctt |
12638460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 25 - 259
Target Start/End: Original strand, 12611224 - 12611457
Alignment:
| Q |
25 |
tttaggcctagaagcaaatattacatcatgggttttaagtacttccttagcatagtctggtgaggaaacaacaatggcaaagatctctcctagttgtagt |
124 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||| || ||||||||||| ||| |||||||||| |||||||| |
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| T |
12611224 |
tttaggcctagatgcaaatattacatcatgggttttaagtacctccctagcatactctggcgatgaaacaacaattgcagagatctctccaagttgtagg |
12611323 |
T |
|
| Q |
125 |
tgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctataataggtagcctccatg |
224 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | ||| | ||| |||||| |||||||||||||| | |||||| |
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| T |
12611324 |
tgcatcaagggtccataaattttcgccaagtctcttaattttcgatgtggtgtagaagtaactaaatgatgtatgcttcctataataggtaacttccatg |
12611423 |
T |
|
| Q |
225 |
gtcctggaggtaggtttggagctgagccttttttc |
259 |
Q |
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||||||| ||||| ||||||||||| ||||||||| |
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| T |
12611424 |
gtcctggtggtagctttggagctga-ccttttttc |
12611457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 248
Target Start/End: Original strand, 63358 - 63580
Alignment:
| Q |
26 |
ttaggcctagaagcaaatattacatcatgggttttaagtacttccttagcatagtctggtgaggaaacaacaatggcaaagatctctcctagttgtagtt |
125 |
Q |
| |
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||||||||||| |||||| | |||||||||||||||| || ||| ||||||| |||||||||||||||||||| ||| |||||||||| |||||||| | |
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|
| T |
63358 |
ttaggcctagatgcaaatttgacatcatgggttttaaatatctccctagcatactctggtgaggaaacaacaattgcagagatctctccaagttgtagct |
63457 |
T |
|
| Q |
126 |
gcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctataataggtagcctccatgg |
225 |
Q |
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||||||||| ||||||| ||||||||||||| || |||||||||||||| ||||| | || ||||| ||||||||||| |||||||||||| ||||||| |
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| T |
63458 |
gcatcaaggatccatgtgttttggccaagtcactcaattttcgatgtggggtagatgtaagtagatgatgtatgtgtccaataataggtagcttccatgg |
63557 |
T |
|
| Q |
226 |
tcctggaggtaggtttggagctg |
248 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
63558 |
tcctggaggtaggtttggagctg |
63580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 22947673 - 22947869
Alignment:
| Q |
40 |
aaatattacatcatgggttttaagtacttccttagcatagtctggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcatcaagggtcca |
139 |
Q |
| |
|
||||||||||||||| ||||| | || |||| ||||||| |||| ||||||||||| |||| ||||| || || ||||| || ||||| || || ||| |
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| T |
22947673 |
aaatattacatcatgagttttcattatttccatagcatattctgctgaggaaacaataatgaaaaagacttcaccaagttgaagatgcattaaagggcca |
22947772 |
T |
|
| Q |
140 |
tgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctataataggtagcctccatggtcctggaggta |
236 |
Q |
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|
| | | || | ||| ||||||||||||| |||||||| |||| || ||||| ||||||| |||||| || |||||| ||||||| ||||| |||| |
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|
| T |
22947773 |
tatttatttgacaattctcttaattttctatgtggtggagagccaataagattatgtatgtttcctatgattggtagcttccatggccctggtggta |
22947869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 22987445 - 22987532
Alignment:
| Q |
80 |
tctggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttc |
167 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| || |||||||| |||||||||||||||| | |||| || || ||||||||||||| |
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|
| T |
22987445 |
tctggtgaggaaacaacaatgaaaaatatctcaccaagttgtagatgcatcaagggtccatatttttttgctaaatctcttaattttc |
22987532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 23018544 - 23018651
Alignment:
| Q |
110 |
tctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctataa |
209 |
Q |
| |
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||||| ||||| || |||||||||||||||| | ||||||||||||| |||||||||| ||| ||| |||| | ||||| |||||| | |||||||| |
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| T |
23018544 |
tctccaagttgaagatgcatcaagggtccatattttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcctataa |
23018643 |
T |
|
| Q |
210 |
taggtagc |
217 |
Q |
| |
|
|||||||| |
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|
| T |
23018644 |
taggtagc |
23018651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 215
Target Start/End: Original strand, 23040334 - 23040440
Alignment:
| Q |
109 |
ctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtagaggaaacaagatggtgtatgtgtcctata |
208 |
Q |
| |
|
|||||| ||||| || ||||||| |||||||| | |||||||||||||||||| ||||||||| ||| ||||| | |||| |||||| | ||||||| |
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| T |
23040334 |
ctctccaagttgaagatgcatcaggggtccatattttttggccaagtctcttagttttcgatggggttgagaggttaacagattgtgtatatttcctata |
23040433 |
T |
|
| Q |
209 |
ataggta |
215 |
Q |
| |
|
||||||| |
|
|
| T |
23040434 |
ataggta |
23040440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 22997676 - 22997732
Alignment:
| Q |
39 |
caaatattacatcatgggttttaagtacttccttagcatagtctggtgaggaaacaa |
95 |
Q |
| |
|
||||||| |||||||| ||||| | || |||||||||||| |||| ||||||||||| |
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|
| T |
22997676 |
caaatataacatcatgagttttcattatttccttagcatattctgctgaggaaacaa |
22997732 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 23025558 - 23025626
Alignment:
| Q |
107 |
atctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggt |
175 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||| | | | |||||||||| || ||||||||||||| |
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|
| T |
23025558 |
atctctccaagttggagatgcatcaagggtccatattctcttgccaagtctcgtagttttcgatgtggt |
23025626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 23037457 - 23037513
Alignment:
| Q |
109 |
ctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattt |
165 |
Q |
| |
|
|||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||| |
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|
| T |
23037457 |
ctctccaagttgaagatgcatcactggtccatattttttggccaagtctcttaattt |
23037513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 23611510 - 23611666
Alignment:
| Q |
80 |
tctggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgatgtggtgtag |
179 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||| || ||||| || |||||||||||||||| | ||||||| || ||||||||| ||| | ||||| | | |
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| T |
23611510 |
tctggtgaagaaataacaatgaaaaagatctcaccaagttgaagatgcatcaagggtccatattttttggctaaatctcttaatcttctaggtggttttg |
23611609 |
T |
|
| Q |
180 |
aggaaacaagatggtgtatgtgtcctataataggtagcctccatggtcctggaggta |
236 |
Q |
| |
|
| |||||||||| | || | ||||| ||| ||||| ||||||| |||||||||| |
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|
| T |
23611610 |
ttgcaacaagatggagaatatttcctaaaatgggtagtttccatggccctggaggta |
23611666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 14307626 - 14307706
Alignment:
| Q |
83 |
ggtgaggaaacaacaatggcaaagatctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaat |
163 |
Q |
| |
|
||||| |||| ||||||| ||||||||| || ||||| || |||||||||||||||| | ||||||| || ||||||||| |
|
|
| T |
14307626 |
ggtgaagaaataacaatgaaaaagatctcaccaagttgaagatgcatcaagggtccatattttttggctaaatctcttaat |
14307706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 21781224 - 21781285
Alignment:
| Q |
109 |
ctctcctagttgtagttgcatcaagggtccatgtattttggccaagtctcttaattttcgat |
170 |
Q |
| |
|
|||||| ||||| || ||||||| ||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
21781224 |
ctctccaagttgaagatgcatcactggtccatattttttggccaagtctcttaatcttcgat |
21781285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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