View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18277_low_13 (Length: 343)

Name: NF18277_low_13
Description: NF18277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18277_low_13
NF18277_low_13
[»] chr5 (12 HSPs)
chr5 (114-330)||(1163930-1164146)
chr5 (114-330)||(1849620-1849836)
chr5 (126-330)||(3299149-3299353)
chr5 (126-330)||(3392042-3392246)
chr5 (125-325)||(38987356-38987556)
chr5 (131-325)||(40417946-40418140)
chr5 (1-86)||(1163817-1163902)
chr5 (125-279)||(39726115-39726269)
chr5 (125-279)||(39879517-39879671)
chr5 (133-279)||(39168603-39168749)
chr5 (148-279)||(39399601-39399735)
chr5 (125-291)||(40596325-40596485)
[»] chr4 (1 HSPs)
chr4 (141-330)||(25912538-25912727)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 114 - 330
Target Start/End: Original strand, 1163930 - 1164146
Alignment:
Q  114 atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163930 atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa 1164029  T
Q  214 cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1164030 cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 1164129  T
Q  314 tactaggcagaataatc 330  Q
    |||||||||||||||||    
T  1164130 tactaggcagaataatc 1164146  T

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Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 114 - 330
Target Start/End: Complemental strand, 1849836 - 1849620
Alignment:
Q  114 atctaatttctcaataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaa 213  Q
    |||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  || ||||||||||||||    
T  1849836 atctaatttctcgataccgagaacaacatattccactaactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaagaaa 1849737  T
Q  214 cagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 313  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1849736 cagcgggtcaaggtaaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatat 1849637  T
Q  314 tactaggcagaataatc 330  Q
    |||||||||||||||||    
T  1849636 tactaggcagaataatc 1849620  T

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Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 126 - 330
Target Start/End: Complemental strand, 3299353 - 3299149
Alignment:
Q  126 aataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 225  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299353 aataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 3299254  T
Q  226 gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 325  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  3299253 gtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa 3299154  T
Q  326 taatc 330  Q
    |||||    
T  3299153 taatc 3299149  T

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Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 126 - 330
Target Start/End: Complemental strand, 3392246 - 3392042
Alignment:
Q  126 aataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 225  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392246 aataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag 3392147  T
Q  226 gtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 325  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  3392146 gtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa 3392047  T
Q  326 taatc 330  Q
    |||||    
T  3392046 taatc 3392042  T

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Target: chr5; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 125 - 325
Target Start/End: Complemental strand, 38987556 - 38987356
Alignment:
Q  125 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 224  Q
    ||||| |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||    
T  38987556 caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa 38987457  T
Q  225 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcaga 324  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||| ||| ||||  |||||||    
T  38987456 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacattaggaggcaga 38987357  T
Q  325 a 325  Q
    |    
T  38987356 a 38987356  T

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Target: chr5; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 131 - 325
Target Start/End: Complemental strand, 40418140 - 40417946
Alignment:
Q  131 cgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaa 230  Q
    |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||||||||    
T  40418140 cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa 40418041  T
Q  231 tggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 325  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||| ||||||||| ||| ||||  ||||||||    
T  40418040 tggatcaagcaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatattttcaccgaaagaagcaacaacattaggaggcagaa 40417946  T

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Target: chr5; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 1163817 - 1163902
Alignment:
Q  1 tttttggcagcagcagtataagtagcaaaagcatcaccatcttcatcatgttcatccttaaaaaccagcttcttcttctgtttatt 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163817 tttttggcagcagcagtataagtagcaaaagcatcaccatcttcatcatgttcatccttaaaaaccagcttcttcttctgtttatt 1163902  T

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Target: chr5; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 125 - 279
Target Start/End: Complemental strand, 39726269 - 39726115
Alignment:
Q  125 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 224  Q
    ||||| |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||    
T  39726269 caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa 39726170  T
Q  225 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 279  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  39726169 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 39726115  T

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Target: chr5; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 125 - 279
Target Start/End: Complemental strand, 39879671 - 39879517
Alignment:
Q  125 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 224  Q
    ||||| |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||    
T  39879671 caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaa 39879572  T
Q  225 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 279  Q
    |||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  39879571 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 39879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 279
Target Start/End: Complemental strand, 39168749 - 39168603
Alignment:
Q  133 agaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatg 232  Q
    |||||| |||||| ||||||||||| ||||| ||||||| ||||||||||||||| |||||| | | ||||||||||| || |    |||||||||||||    
T  39168749 agaacaacatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagcctttaaggaaaaagcagtcaaggtaaatg 39168650  T
Q  233 gatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 279  Q
    ||||||| ||||||| | |||||||||||||||| || |||||||||    
T  39168649 gatcaagtaaagtaatttttttggcaaccctagtgcatataacaata 39168603  T

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Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 39399735 - 39399601
Alignment:
Q  148 actaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaa---ag 244  Q
    |||||||||| ||||  ||||||| ||||||| ||||||| |||||| ||| ||||||||||| || |   ||||||||||||||||||||||||   ||    
T  39399735 actaactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagcggtcaaggtaaatggatcaagcaaagtag 39399636  T
Q  245 taaatgttttggcaaccctagtacaaataacaata 279  Q
    ||| | |||||||||||||||| || || ||||||    
T  39399635 taatttttttggcaaccctagtgcatatgacaata 39399601  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 291
Target Start/End: Complemental strand, 40596485 - 40596325
Alignment:
Q  125 caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa 224  Q
    ||||| |||| |||| ||||||||||||||||  ||||| || ||||||||||||  |||||| |||||| ||| || | ||||||| |||||   ||||    
T  40596485 caatatcgagcacagaatattccactaactgactcctagtgagtgaaggcgtgaaaagtgcattccagtactgatcaacatttaagatacagtacctcaa 40596386  T
Q  225 ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatattt 291  Q
    ||| ||   |||||||||||||| | |||| ||||||    ||||||| | |||||||| |||||||    
T  40596385 ggtgaa--aatcaagcaaagtaattcttttagcaacc----tacaaatgataataggactaatattt 40596325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 141 - 330
Target Start/End: Original strand, 25912538 - 25912727
Alignment:
Q  141 atattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagc 240  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||| |||||| ||| ||||||| |||||||| || ||||||||||||||||||||     
T  25912538 atattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaaggtaaatggatcaagt 25912637  T
Q  241 aaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatc 330  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||  ||||||||||||| ||||  |||||||| ||||    
T  25912638 aaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatatttacactgaaagaagcagcaacattaggaggcagaaaaatc 25912727  T

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