View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18277_low_16 (Length: 314)
Name: NF18277_low_16
Description: NF18277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18277_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 43527302 - 43527613
Alignment:
| Q |
1 |
tctaaagttagcgttctattgtttttaacttacatgttagctttagtatccaagaaagtattattagttgtggatttgtgactggtgact--gataagtc |
98 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43527302 |
tctaaagttagcattctattgtttttaacttacatgttagctttaggattcaagaaagtattattagttgtggatttgtgactggtgactgcgataagtc |
43527401 |
T |
|
| Q |
99 |
catgcatgcatgctcgtaaaatgcc----aataagatgttgactatgaaattgttgctagtatgaatgatggaatggttggtgcaaagctaacaa----- |
189 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43527402 |
catgcatgcatgctcgtaaaatgccaattaataagatgttgactatgaaattgttg-tagtatgaatgatggaatggttggtgcaaagctaacaaatata |
43527500 |
T |
|
| Q |
190 |
-atatagttgagtttctgctatcaattaatatgatgtgggactcaaggactgaggtaacaaatctgtgacgtgtagtttcttatagaaaactgatatttg |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43527501 |
tatatagttgagtttctgctatcaattaatatgatgtgggactcaaggactgaggtaacaaatctgtgacgtgtagtttcttatagaaaactgatatttg |
43527600 |
T |
|
| Q |
289 |
cttcgatgtatct |
301 |
Q |
| |
|
||||||||||||| |
|
|
| T |
43527601 |
cttcgatgtatct |
43527613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 257
Target Start/End: Original strand, 43542722 - 43542874
Alignment:
| Q |
107 |
catgctcgtaaaatgccaat-----aagatgttgactatgaaattgttgctagtatgaatgatggaatggttggtgcaaagctaacaaatatagttga-g |
200 |
Q |
| |
|
||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| | || |||||||| | |
|
|
| T |
43542722 |
catgctcgtaaaaagccaattgctgaagatgtagactatgaaattgttgctagtatgactgatggaatggttggtgcagagctagctaacatagttgagg |
43542821 |
T |
|
| Q |
201 |
tttctgctatcaattaatatgatgtgggactcaaggactgaggtaacaaatctgtga |
257 |
Q |
| |
|
|| |||||||| ||||||||| ||||||| ||||| ||||||| ||||| |||| |
|
|
| T |
43542822 |
ttgctgctatc----aatatgatgcgggactcgaggaccgaggtaataaatccgtga |
43542874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University