View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18277_low_18 (Length: 250)
Name: NF18277_low_18
Description: NF18277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18277_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 27119662 - 27119424
Alignment:
| Q |
1 |
atttacaaattgcaaatgagttttattttcatcaaattatgtattaggatgacggagttttatcttcgatcgattttatgttgtctttgatataaggtat |
100 |
Q |
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| T |
27119662 |
atttacaaattgcaaatgagttttattttcatcaaattatgtattaggatgacggagttttatcttcgatcgattttatgttgtctttgatataaggtat |
27119563 |
T |
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| Q |
101 |
aattattttattattacaaataattttgtgacggcatgtttcacaagtccgagtttcaacttataaaaatgttgaaattgttaagctgaaaatggtgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
27119562 |
aattattttattattacaaataattttgtgacagcatgtttcacaagtccgagtttcaacttgtaaaaatgttgaaattgttaagctgaaaatgatgatg |
27119463 |
T |
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| Q |
201 |
ggatcgaaactttgcctcctttctattaactatgttcat |
239 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
27119462 |
ggatcgaaacttcgcctcctttctattaactatgttcat |
27119424 |
T |
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