View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18277_low_20 (Length: 239)
Name: NF18277_low_20
Description: NF18277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18277_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 27119873 - 27119652
Alignment:
| Q |
18 |
aaattgtcacacaattagctatatctattgcccaaaaggtagtcaattattattttatatttttgcctaaaacaatcattttatattttgtcaaacaatc |
117 |
Q |
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| T |
27119873 |
aaattgtcacacaattagctatatctattgcccaaaaggtagtcaattattattttatatttttgcctaaaacaatcattttatattttgtcaaacaatc |
27119774 |
T |
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| Q |
118 |
acaggtatatatatgtacatcaataactaatcacaggtataaggccatagtttctagtcacaagtcatagcaaaatctatgtactggttttggctgacat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27119773 |
acaggtatatatatgtacatcaataactaatcacaggtataaggccatagtttctagtcacaagtcatagcaaaatctatgtactggttttggctgacat |
27119674 |
T |
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| Q |
218 |
attcactagtcatttacaaatt |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
27119673 |
attcactagtcatttacaaatt |
27119652 |
T |
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