View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18277_low_4 (Length: 515)
Name: NF18277_low_4
Description: NF18277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18277_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 3305000 - 3304501
Alignment:
| Q |
1 |
taccaaagttacacagataagatcaaaagcaacatcaaggaacaaaagtgtatcagtatcttatagattccatctttgtcactgaataattttgtaactc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3305000 |
taccaaagttacacagataagatcaaaagcaacatcaaggaacaaaagtgtatcagtatcttatagattccatctttgtcactgaataattttgtaactc |
3304901 |
T |
|
| Q |
101 |
agtaaaagattaggactttcattcaagcgtagatgctacgtcgagatacttgtaatcaaacacttcaaatattctcagagctttcgcgggatgatttgta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3304900 |
ggtaaaagattaggactttcattcaagcgtagatgctacgtcgagatacttgtaatcaaacacttcaaatattctcagagctttcgcgggatgatttgta |
3304801 |
T |
|
| Q |
201 |
tatccggtatgcggctatgcacattgtgaaattacctataacagttagtgccgcttgaagagctaccaatacctgcaattcatcacaaaaagccattaat |
300 |
Q |
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| T |
3304800 |
tatccggtatgcggctaggcacattgtgaaattacctataacagttagtgccgcttgaagagctaccaatacctgcaattcatcacaaaaagccattaat |
3304701 |
T |
|
| Q |
301 |
ttcatatgcacaacccctatttcacattcaataagacttttagtacaatatgtacggatcatttgttcattgttcttgcgcaacaagaaaattttcatga |
400 |
Q |
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| T |
3304700 |
ttcatatgcacaacccctatttcacattcaatcagacttttagtacaatatgtacggatcatttgttcattgttcttgcgcaacaagaaaattttcatga |
3304601 |
T |
|
| Q |
401 |
aaacgtcattgtgttaagccgtagaagacatcaaatctataagaatggattttgcagtattttcacaaataat-ttttctgtattttaacaaatatatgt |
499 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
3304600 |
aaacgtcattgtgttaagccatagaagacatcaaatctataagaatggattttgcagtattttaacaaataattttttctgtattttaacaaatatatgt |
3304501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 43 - 358
Target Start/End: Complemental strand, 3293290 - 3292973
Alignment:
| Q |
43 |
caaaagtgtatcagtatcttatagattccatctttgtcact--gaataattttgtaactcagtaaaagattaggactttcattcaagcgtagatgctacg |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| |||||| ||||||||||||| ||||| |||||| ||||||| |
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| T |
3293290 |
caaaagtgtatcagtatcttatagattccatctttgtcacttagaataatatggtaaatcagtagaagattaggacttccattcgagcgtaaatgctact |
3293191 |
T |
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| Q |
141 |
tcgagatacttgtaatcaaacacttcaaatattctcagagctttcgcgggatgatttgtatatccggtatgcggctatgcacattgtgaaattacctata |
240 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
3293190 |
tcgagatacttgtaatcaaacacttcaaatgttctcagagctttcgcgggatgatttgtatatccggtatgcagctatacacattgtgaaattacctata |
3293091 |
T |
|
| Q |
241 |
acagttagtgccgcttgaagagctaccaatacctgcaattcatcacaaaaagccattaatttcatatgcacaacccctatttcacattcaataagacttt |
340 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||| |
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| T |
3293090 |
acagttagtgccgcttgaagagctaccaatacctgcatctcattacaatgagccattaatttcatatgtacaacccctatttcacattcaatcagatttt |
3292991 |
T |
|
| Q |
341 |
tagtacaatatgtacgga |
358 |
Q |
| |
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|||||||||||||||||| |
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| T |
3292990 |
tagtacaatatgtacgga |
3292973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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