View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18277_low_5 (Length: 468)
Name: NF18277_low_5
Description: NF18277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18277_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 83 - 450
Target Start/End: Complemental strand, 53588135 - 53587774
Alignment:
| Q |
83 |
aatttaagcatttgttcgtcatgcaaactttttggaacatccagagtcattcaaataaactacatttatcannnnnnnnnnnnnnnnnnttaaaatcaaa |
182 |
Q |
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| T |
53588135 |
aatttaagcatttgttcttcatgcaaactttttggaacatccagagtcattcaaataaattacatttatcatgtgtgtcgtgtgtgtgtttaaaatcaaa |
53588036 |
T |
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| Q |
183 |
atcacaggtacatttacaaaataaagttgattcatacatacatttgcacnnnnnnnnnnnnnnnngtaatcatgttattgatatgaaatttcatcgcggt |
282 |
Q |
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| T |
53588035 |
atcacaggtacatttacaaaataaagttgattcatacatacatttgcactttttttt--------gtaatcatgttattgatatgaaatttcatcgcagt |
53587944 |
T |
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| Q |
283 |
tatgagtgattaatgtttgtcagagaaaatgtaagacatatgag--ttgagttcttttattccaattgtattttcttcatacacaaaattagagatcgag |
380 |
Q |
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| T |
53587943 |
tacgagtgattaatgtttgtcagagaaaatgtaagacatatgtgaattgagttcttttattccaatcgtattttattcatacacaaaattagagatcgag |
53587844 |
T |
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| Q |
381 |
ctcataataacttgtttaaaggataaaaatatcttaattacctcataggatcacatgattatgagtgatg |
450 |
Q |
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| T |
53587843 |
ctcataataacttgtttaaaggataaaaatatcttaatcaccgcataggatcacatgattatgagtgatg |
53587774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 53588193 - 53588135
Alignment:
| Q |
1 |
ataagattagcaagggatctccaaattaatagaacccccgaaatacaacatatatcaaa |
59 |
Q |
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| T |
53588193 |
ataagattagcaagggatctccaaattaatagaacccccgaaatccaacacatatcaaa |
53588135 |
T |
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