View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18277_low_6 (Length: 439)
Name: NF18277_low_6
Description: NF18277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18277_low_6 |
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| [»] scaffold0244 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 37665342 - 37665620
Alignment:
| Q |
18 |
tataagaggtaagatgtcttgaaccgtgaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtag |
117 |
Q |
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| T |
37665342 |
tataagaggtaagatgtcctgaaccgcgaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtag |
37665441 |
T |
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| Q |
118 |
cctccaagtctacctccaacaaataactggctctatttgttgagtcgttagattcgatctaaccac----ctatatccttaactagttgagtattaatca |
213 |
Q |
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| T |
37665442 |
cctccaagtctacctccaacaaataactggctctatttgttgagtcgttagattcgatctaaccacctagctatatccttaactagttgagtattaatca |
37665541 |
T |
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| Q |
214 |
tttgaagaagtactccaaatgagttaatccttaatgtcatgaacaatggtaatgctacgaattttagagaatttacatg |
292 |
Q |
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| T |
37665542 |
tttgaagaagtactccaaatgagtttatccttaatgtcatgaacaatggtaatgctacgaattttagagaatttacatg |
37665620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 13451668 - 13451421
Alignment:
| Q |
22 |
agaggtaagatgtcttgaaccgtgaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtagcctc |
121 |
Q |
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||||||||||||||||||||| ||| |||| |||||||| |||||||||||| | | | | ||||| ||||||||||| ||||| || ||||||| |
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| T |
13451668 |
agaggtaagatgtcttgaaccaaagaaggcattcgtagggagactagcatgcatcccaagccagctaaaatgtcttagatttttagaaaccgatagcctc |
13451569 |
T |
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| Q |
122 |
caagtctacctccaacaaataactggctctatttgttgagtcgttagattc-gatctaaccacctatatccttaactagttgagtattaatcatttgaag |
220 |
Q |
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| T |
13451568 |
tgaatccaactccaacaaataacaggttctaattgttaa---gttagattctgatttaactacctatatccataactacctgagaactgaccatttggat |
13451472 |
T |
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| Q |
221 |
aagtactccaaatgagttaatccttaatgtcatgaacaatggtaatgctac |
271 |
Q |
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| T |
13451471 |
aagcaatccaaataagtctatcctcattgtcatgatcaatggtaatgctac |
13451421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 428
Target Start/End: Original strand, 37665681 - 37665754
Alignment:
| Q |
353 |
cttgtcattaacatattcatttatcactcttaannnnnnnnnnaaaatatataaaaagatttctccattttttcat |
428 |
Q |
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| T |
37665681 |
cttgtcattaacat--tcatttatcactcttaattttttttttaaaatatataaaaagatttctccattttttcat |
37665754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 22 - 275
Target Start/End: Original strand, 1260029 - 1260280
Alignment:
| Q |
22 |
agaggtaagatgtcttgaaccgtgaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtagcctc |
121 |
Q |
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| T |
1260029 |
agaggtaagatgtcgtgaaccacgaaaggcattgatagggaggctagcatgcatcaccagccaacaaaaatgtcttagattttcagaaacttgaagcctc |
1260128 |
T |
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| Q |
122 |
caagtctacctccaacaaataactggctctatttgttgagtcgttagatt-cgatctaaccacctatatccttaactagttgagtattaatcatttgaag |
220 |
Q |
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| T |
1260129 |
cagatccaactccaacaattaactagctctacttgttga---gttagattatgatcaaaccacctatatccataactagctgagtattgaccatttggag |
1260225 |
T |
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| Q |
221 |
aagtactccaaatgagttaatccttaatgtcatgaacaatggtaatgctacgaat |
275 |
Q |
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| T |
1260226 |
aagcacttcaaatgagtttatcttcggtgtcatgatcaatggtaatgctacgaat |
1260280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 33509236 - 33509096
Alignment:
| Q |
22 |
agaggtaagatgtcttgaaccgtgaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtagcctc |
121 |
Q |
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|||||||||||||| |||||| ||||| |||||||||||||||||||||||||| || | ||||||||| ||| ||||||||| ||| | | |||||| |
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| T |
33509236 |
agaggtaagatgtcgtgaaccacgaaaggcattggtagggaggctagcatgcatcaccagccaacaaaaatgtctaagattttcataaaccagaagcctc |
33509137 |
T |
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| Q |
122 |
caagtctacctccaacaaataactggctctatttgttgagt |
162 |
Q |
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| || | ||||||||| |||||||||||| ||||||||| |
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| T |
33509136 |
tagatccaactccaacaattaactggctctacttgttgagt |
33509096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 8782 - 8905
Alignment:
| Q |
22 |
agaggtaagatgtcttgaaccgtgaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtagcctc |
121 |
Q |
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|||||||||||||| |||||| ||||| ||||||||||||||| | |||||||| || || ||||||||| ||||||||||||||||| || |||||| |
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| T |
8782 |
agaggtaagatgtcgtgaaccacgaaaggcattggtagggaggccatcatgcatcaccaaccaacaaaaatgtcttagattttcagaaactggaagcctc |
8881 |
T |
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| Q |
122 |
caagtctacctccaacaaataact |
145 |
Q |
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| T |
8882 |
caaatccaactccaacaattaact |
8905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 164 - 271
Target Start/End: Original strand, 14852 - 14960
Alignment:
| Q |
164 |
gttagattc-gatctaaccacctatatccttaactagttgagtattaatcatttgaagaagtactccaaatgagttaatccttaatgtcatgaacaatgg |
262 |
Q |
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||||||||| |||| |||||||||||||| ||||||| |||||||| | |||||| ||||| |||||||||||||| ||||| |||||||| |||||| |
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| T |
14852 |
gttagattctgatcaaaccacctatatccataactagatgagtattgaccatttggagaagcactccaaatgagtttatcctcggtgtcatgatcaatgg |
14951 |
T |
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| Q |
263 |
taatgctac |
271 |
Q |
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| T |
14952 |
taatgctac |
14960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 228
Target Start/End: Original strand, 40699163 - 40699367
Alignment:
| Q |
22 |
agaggtaagatgtcttgaaccgtgaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtagcctc |
121 |
Q |
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|||||||||||||| |||||| |||| ||||||||||||||||| |||||||| | | ||||||||| | |||||||||||||| | |||||| |
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| T |
40699163 |
agaggtaagatgtcgtgaaccaccaaaggcattggtagggaggctatcatgcatcttcatccaacaaaaatgccatagattttcagaaacttgaagcctc |
40699262 |
T |
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| Q |
122 |
caagtctacctccaacaaataactggctctatttgttgagtcgttagattc-gatctaaccacctatatccttaactagttgagtattaatcatttgaag |
220 |
Q |
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| T |
40699263 |
caggtccaactccaacaattaattagctctacttgttga---gttagattctgatctaaccacctatattcataactagctgaatattgaccatttggag |
40699359 |
T |
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| Q |
221 |
aagtactc |
228 |
Q |
| |
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||| |||| |
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| T |
40699360 |
aagcactc |
40699367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 53910688 - 53910603
Alignment:
| Q |
170 |
ttcgatctaaccacctatatccttaactagttgagtattaatcatttgaagaagtactccaaatgagttaatccttaatgtcatga |
255 |
Q |
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| T |
53910688 |
ttcgatctaaccacatatatcaataactagttgagtattggccatctaaagaagcactccaaatgagtctatcctcaatgtcatga |
53910603 |
T |
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Back To:
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