View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18277_low_8 (Length: 375)

Name: NF18277_low_8
Description: NF18277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18277_low_8
NF18277_low_8
[»] chr4 (3 HSPs)
chr4 (1-359)||(43560423-43560796)
chr4 (127-165)||(21173782-21173820)
chr4 (115-168)||(24359816-24359869)
[»] chr1 (5 HSPs)
chr1 (41-168)||(51044468-51044595)
chr1 (242-358)||(51044111-51044227)
chr1 (102-166)||(16138908-16138972)
chr1 (82-168)||(37962865-37962951)
chr1 (102-166)||(16127398-16127462)
[»] chr3 (3 HSPs)
chr3 (41-168)||(34626631-34626758)
chr3 (242-358)||(34626858-34626974)
chr3 (74-166)||(44674038-44674130)
[»] chr7 (1 HSPs)
chr7 (82-162)||(45676052-45676132)
[»] chr5 (1 HSPs)
chr5 (115-178)||(2590833-2590896)
[»] chr2 (4 HSPs)
chr2 (104-168)||(27172787-27172851)
chr2 (104-171)||(28205955-28206022)
chr2 (113-176)||(42789005-42789068)
chr2 (95-176)||(37881847-37881928)
[»] chr8 (7 HSPs)
chr8 (84-165)||(5960363-5960444)
chr8 (115-176)||(41351226-41351287)
chr8 (110-165)||(5843121-5843176)
chr8 (113-165)||(5849866-5849918)
chr8 (113-165)||(5921235-5921287)
chr8 (113-165)||(5949127-5949179)
chr8 (113-165)||(5984655-5984707)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 43560423 - 43560796
Alignment:
Q  1 tgattccaaacatgcacaaaatgatatatgttgaatcatata----------------cctatttccaaggacttcatgaagactgattataagatcctc 84  Q
    ||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||    
T  43560423 tgattccaaacatgcacaaaatgatatatgttgaatcatatattcgtatatgatgttacctatttccaaggacttcatgaagactgattataagatcctc 43560522  T
Q  85 ttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaagtcctgaagaaatt 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43560523 ttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaagtcctgaagaaatt 43560622  T
Q  185 catcaaccatgttagactcttagttttgaagaatgtaacatgattttaacaaattacttaccagcttgtttaggaacagaactccagcaaccaacaccaa 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43560623 catcaaccatgttagactcttagttttgaagaatgtaacatgattttaac-aattacttaccagcttgtttaggaacagaactccagcaaccaacaccaa 43560721  T
Q  285 atctagttatatgattgaaaagcttttcatcttcttcaggggaccataaacctttcctcaacttttgctttaaac 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43560722 atctagttatatgattgaaaagcttttcatcttcttcaggggaccataaacctttcctcaacttttgctttaaac 43560796  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 21173820 - 21173782
Alignment:
Q  127 atagtttatccatctcaatctacaactctttccacatct 165  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  21173820 atagtttagccatctcaatctacaactttttccacatct 21173782  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 24359816 - 24359869
Alignment:
Q  115 atcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttg 168  Q
    |||||||||||| || || |||||||| || |||||||| ||||||||||||||    
T  24359816 atcaggcctcaagtaattgatccatcttaacctacaactttttccacatctttg 24359869  T

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Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 41 - 168
Target Start/End: Complemental strand, 51044595 - 51044468
Alignment:
Q  41 tacctatttccaaggacttcatgaagactgattataagatcctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatc 140  Q
    ||||||||||||||  ||||||||||| |||| |||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  51044595 tacctatttccaagtgcttcatgaagattgatgataagatcttcctcttgttttgagaacattcctctcttcaaatcaggcctcaaatagtttatccatc 51044496  T
Q  141 tcaatctacaactctttccacatctttg 168  Q
    |||||||||| ||||||||||| |||||    
T  51044495 tcaatctacagctctttccacacctttg 51044468  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 242 - 358
Target Start/End: Complemental strand, 51044227 - 51044111
Alignment:
Q  242 ttaccagcttgtttaggaacagaactccagcaaccaacaccaaatctagttatatgattgaaaagcttttcatcttcttcaggggaccataaacctttcc 341  Q
    ||||||||| |||||||||| |||||||| || |||||||||||  | ||||| | |||||||||||| ||||||||||||||||||||||||||||| |    
T  51044227 ttaccagctagtttaggaactgaactccaacatccaacaccaaacatggttatgtaattgaaaagcttatcatcttcttcaggggaccataaaccttttc 51044128  T
Q  342 tcaacttttgctttaaa 358  Q
    | |  ||||||||||||    
T  51044127 ttagtttttgctttaaa 51044111  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 16138908 - 16138972
Alignment:
Q  102 ttcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctt 166  Q
    |||||||||| | ||||||  | |||||||| |||||||||||||||||||||||||||||||||    
T  16138908 ttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatctt 16138972  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 37962951 - 37962865
Alignment:
Q  82 ctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttg 168  Q
    ||||||||||||||||||   |||||| || |||||||||||||| || ||||||||||| || || |||||||| ||||| |||||    
T  37962951 ctcttcttgttgtgagaatgctcctcttttcaaatcaggcctcaagtaatttatccatcttaacctgcaactcttcccacacctttg 37962865  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 16127398 - 16127462
Alignment:
Q  102 ttcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctt 166  Q
    |||||||||| | |||||  || ||||| || |||||||||||||||||||||||||||||||||    
T  16127398 ttcctctcttaatatcagttcttaaataattaatccatctcaatctacaactctttccacatctt 16127462  T

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Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 34626631 - 34626758
Alignment:
Q  41 tacctatttccaaggacttcatgaagactgattataagatcctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatc 140  Q
    ||||||||||||||  ||||||||||| |||| |||||||| || ||||||| |||||||||||||||||| |||||||| |||| |||||| |||||||    
T  34626631 tacctatttccaagtgcttcatgaagattgataataagatcttcctcttgttttgagaacattcctctcttcaaatcaggtctcagatagttgatccatc 34626730  T
Q  141 tcaatctacaactctttccacatctttg 168  Q
    ||||||||||||||||||||||||||||    
T  34626731 tcaatctacaactctttccacatctttg 34626758  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 358
Target Start/End: Original strand, 34626858 - 34626974
Alignment:
Q  242 ttaccagcttgtttaggaacagaactccagcaaccaacaccaaatctagttatatgattgaaaagcttttcatcttcttcaggggaccataaacctttcc 341  Q
    |||||||||  ||||||||| |||||||| || || ||||||||  | ||||| | |||||||||||| ||||||||||||||||||||||||||||| |    
T  34626858 ttaccagctaatttaggaactgaactccaacatccgacaccaaacatggttatgtaattgaaaagcttctcatcttcttcaggggaccataaaccttttc 34626957  T
Q  342 tcaacttttgctttaaa 358  Q
    | |  ||||||||||||    
T  34626958 ttagtttttgctttaaa 34626974  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 44674130 - 44674038
Alignment:
Q  74 ataagatcctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctt 166  Q
    |||||||| ||||||||||  | |||  |||||||||| | |||||| || |  || ||||||||||||||||| |||||||| |||||||||    
T  44674130 ataagatcatcttcttgttcagtgaagtttcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatctt 44674038  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 45676052 - 45676132
Alignment:
Q  82 ctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccaca 162  Q
    ||||||||| | ||||||   ||||||||| ||||||||||| | ||| |||||||||||||||||||||||||| |||||    
T  45676052 ctcttcttgctctgagaatgctcctctcttcaaatcaggccttagataatttatccatctcaatctacaactcttcccaca 45676132  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 2590896 - 2590833
Alignment:
Q  115 atcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaagtcctgaa 178  Q
    ||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||||    
T  2590896 atcaggccttaaataatttatccatctcaacctacaactcttaccacacctttgaagccctgaa 2590833  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 27172787 - 27172851
Alignment:
Q  104 cctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttg 168  Q
    ||||| |||| ||| || |||||||||||| ||||||| ||||| ||||||||||||||||||||    
T  27172787 cctctttttagatctggtctcaaatagtttgtccatcttaatctgcaactctttccacatctttg 27172851  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 28206022 - 28205955
Alignment:
Q  104 cctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaag 171  Q
    |||||||||||||||||||| | ||| || ||||||||||| | |||||| || ||||||| ||||||    
T  28206022 cctctctttaaatcaggcctaagataattgatccatctcaaacgacaacttttcccacatcgttgaag 28205955  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 42789005 - 42789068
Alignment:
Q  113 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaagtcctg 176  Q
    |||||||| || ||||| |||||||||||||| || ||||| ||||||||||| || |||||||    
T  42789005 aaatcaggtcttaaataatttatccatctcaacctgcaactttttccacatctctgcagtcctg 42789068  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 37881847 - 37881928
Alignment:
Q  95 gagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaagtcctg 176  Q
    |||||| |||||||||| | |||||| |||||||||||| ||||||  |  | ||||||||| ||||| |||||||| ||||    
T  37881847 gagaaccttcctctcttgatatcaggtctcaaatagtttgtccatcgaagacgacaactcttaccacacctttgaagacctg 37881928  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 5960363 - 5960444
Alignment:
Q  84 cttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 165  Q
    |||||||||| |||||  |||| |  || |||||||| || | ||| ||||||||||| |||||||||||||||||||||||    
T  5960363 cttcttgttgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatct 5960444  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 41351226 - 41351287
Alignment:
Q  115 atcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaagtcctg 176  Q
    |||||| |||||||| ||||||||||| |||| ||||||||| ||||| |||||||| ||||    
T  41351226 atcaggtctcaaataatttatccatcttaatcgacaactcttaccacacctttgaagccctg 41351287  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 5843121 - 5843176
Alignment:
Q  110 tttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 165  Q
    ||||||||||| || | ||| ||||||||||| ||||||||||| |||||||||||    
T  5843121 tttaaatcaggtcttagataatttatccatcttaatctacaactttttccacatct 5843176  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 5849866 - 5849918
Alignment:
Q  113 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 165  Q
    |||||||| || | ||| ||||||||||| ||||||||||| |||||||||||    
T  5849866 aaatcaggtcttagataatttatccatcttaatctacaactttttccacatct 5849918  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 5921235 - 5921287
Alignment:
Q  113 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 165  Q
    |||||||| || | ||| ||||||||||| ||||| |||||||||||||||||    
T  5921235 aaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 5921287  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 5949127 - 5949179
Alignment:
Q  113 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 165  Q
    |||||||| || | ||| ||||||||||| ||||| |||||||||||||||||    
T  5949127 aaatcaggtcttagataatttatccatcttaatcttcaactctttccacatct 5949179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 5984655 - 5984707
Alignment:
Q  113 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 165  Q
    |||||||| || | ||| ||||||||||| ||||| |||||||||||||||||    
T  5984655 aaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 5984707  T

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