View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_high_12 (Length: 582)
Name: NF18278_high_12
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Complemental strand, 3432683 - 3432164
Alignment:
| Q |
18 |
ttaactaattcaaaaaacgatattaagtttccattggttttggatgatattgtgagtacaactgtgaagaggccnnnnnnntcaaggagcaaaaaggaga |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3432683 |
ttaactaattcaagaaacgatattaagtttccattggttttggatgatatggtgagtacaactgtgaagaggccaaaaaaatcaaggagcaaaaaggaga |
3432584 |
T |
|
| Q |
118 |
aggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataaagataaggtggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432583 |
aggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataaagataaggtggt |
3432484 |
T |
|
| Q |
218 |
taagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagttgtagatttgga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432483 |
taagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagttgtagatttgga |
3432384 |
T |
|
| Q |
318 |
ttaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggacttgttaaaatcagaaaca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432383 |
ttaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggacttgttaaaatcagaaaca |
3432284 |
T |
|
| Q |
418 |
ttatgatagagcttgaaggttgaaaatttgaaccacttgatatatatgtgtgtgtgtattagtttattttattttgtgaaggaggaccacactgatatat |
517 |
Q |
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| T |
3432283 |
ttatgatagagcttgaaggttgaaaatttgaaccacttgatatatatgtgtgtgtgtattagtttattttattttgtgaaggaggaccacactgatatat |
3432184 |
T |
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| Q |
518 |
gtatgcatggtatgtatgtg |
537 |
Q |
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|||||||||||||||||||| |
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| T |
3432183 |
gtatgcatggtatgtatgtg |
3432164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 47 - 455
Target Start/End: Complemental strand, 3426484 - 3426073
Alignment:
| Q |
47 |
tccattggttttggatgatattgtgagtacaactgtgaagaggccnnnnnnntcaaggagcaaaaaggagaaggaagaagaagaagaggttttagttatt |
146 |
Q |
| |
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|||||||||||||||| || |||| ||||||| |||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||| ||| |
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| T |
3426484 |
tccattggttttggataatgttgttagtacaattgtgaagaggccaaagaaatcaaggagcaagaaggagaaggaagaaaaggaagaggttttagtgatt |
3426385 |
T |
|
| Q |
147 |
gaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataaagat---aaggtggttaagccatttaatacagagtttgctg |
243 |
Q |
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| T |
3426384 |
gaagggattgagtttgataagagtttaggtgttaagtttgatgttttcattaatgatgaagatgataaggtgattaagccagttaatacggagtttgctg |
3426285 |
T |
|
| Q |
244 |
ggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagttgtagatttggattaacggacttgctggaagatttggg |
343 |
Q |
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| T |
3426284 |
gaagctttgtgaatgtacctcattcttcccatgatcacaaaaagaagaagactaatagttgtttaagggttggattaacggatttgttggaagatttggg |
3426185 |
T |
|
| Q |
344 |
agttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggacttgttaaaatcagaaacattatgatagagcttgaaggttgaaaa |
443 |
Q |
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|| ||| |||||||| || ||||||||||||||||| |||||||| ||||||||| |||| ||||||||||| || | |||||||||||||| ||||||| |
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| T |
3426184 |
agctgaggatgatgatagcgttgtggttactttggtaccaaggtatgggaaaggaattgtcaaaatcagaaatatcaagatagagcttgaagattgaaaa |
3426085 |
T |
|
| Q |
444 |
tttgaaccactt |
455 |
Q |
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||| ||||||| |
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| T |
3426084 |
tttctaccactt |
3426073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 464
Target Start/End: Original strand, 11897781 - 11898230
Alignment:
| Q |
18 |
ttaactaattcaaaaaacgatattaagtttccattggttttggatgatattgtgagtacaactgtgaagaggccnnnnnnntcaaggagcaaaaaggaga |
117 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||||| ||||| |
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| T |
11897781 |
ttaactaattcaaggaacgatgttaagtttccattggttttggataatattgtgagtacaattgtgaggaggccaaagaaatcaaggagcaaaacggaga |
11897880 |
T |
|
| Q |
118 |
aggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataaagat---aaggt |
214 |
Q |
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|||||||||| |||||||||||||| ||||||||||||| |||||||| || | |||| ||||||||||| || ||||||||| ||||| |||| |
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| T |
11897881 |
aggaagaagaggaagaggttttagtgattgaagggattgagtttgataagagtttaggtgttaagtttgatgttttcattaatgatgaagatgctaagga |
11897980 |
T |
|
| Q |
215 |
ggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagttgtagattt |
314 |
Q |
| |
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| |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||| || | || |||||| | |||||| ||| || || |
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| T |
11897981 |
gattaagccagttaatacggagtttgctggaagctttgtgaatgtacctcattcttcccatgatcacaaaaagaagaagactaatagctgtttaagggtt |
11898080 |
T |
|
| Q |
315 |
ggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggacttgttaaaatcagaa |
414 |
Q |
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||||||||||| ||| || |||||||||||| ||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
11898081 |
ggattaacggatttgttgaaagatttgggagctgaggatgatgatagcattgtggttactttggttccaaggtacaggaaaggacttgttaaaatcacaa |
11898180 |
T |
|
| Q |
415 |
acattatgatagagcttgaaggttgaaaatttgaaccacttgatatatat |
464 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11898181 |
acattaagatagagcttgaaggttgaaaatttggaccacttgatatatat |
11898230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 284 - 464
Target Start/End: Original strand, 11913093 - 11913272
Alignment:
| Q |
284 |
aatgaagaatattaatagtagttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttcca |
383 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
11913093 |
aatgaagaatattaatagtagttgcagatttggattaacggacttgctggaagatttgggagctgacgatgatgacagtgttgtggttactttggttcca |
11913192 |
T |
|
| Q |
384 |
aggtacgggaaaggacttgttaaaatcagaaacattatgatagagcttgaaggttgaaaatttgaaccacttgatatatat |
464 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||| | || |||||| |||||||| ||| |||||||||||||||| |
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| T |
11913193 |
tggtaagggaaaggacttgttaaaatcacaaacattaaca-agtccttgaaagttgaaaacttggaccacttgatatatat |
11913272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 101 - 232
Target Start/End: Original strand, 11912936 - 11913066
Alignment:
| Q |
101 |
aaggagcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaat |
200 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| || ||| ||||||||| |||||||||||| | |||||||||||||||||||||||||| |
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| T |
11912936 |
aaggagcaaaaaggagaaggaagaagaggaagaggtttcagcgattaaagggattgagtttgatacgaacatacgtgtaaagtttgatgtgtttattaat |
11913035 |
T |
|
| Q |
201 |
gataaagataaggtggttaagccatttaatac |
232 |
Q |
| |
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||| || ||||||||||||||||||||||||| |
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| T |
11913036 |
gatgaa-ataaggtggttaagccatttaatac |
11913066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 11912874 - 11912934
Alignment:
| Q |
18 |
ttaactaattcaaaaaacgatattaagtttccattggttttggatgatattgtgagtacaa |
78 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
11912874 |
ttaactaattcaagaaacgatgttaagtttccattggttttggataatactgtgagtacaa |
11912934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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