View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_high_13 (Length: 556)
Name: NF18278_high_13
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 155 - 285
Target Start/End: Original strand, 24004554 - 24004677
Alignment:
| Q |
155 |
agataatttatttgtttcttggatgcatgttatgttttggacatgcttttggagcactttacctaataactctttaaatcaaagcaccaatgtgagatct |
254 |
Q |
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| T |
24004554 |
agataatttagttgtttcttgaatgcatgttatgttttggacatgcat-------actttacctaattactctttaaatcaaagcaccaatgtgagatct |
24004646 |
T |
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| Q |
255 |
gaaagttattttcaagctcaagctcaacgga |
285 |
Q |
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| T |
24004647 |
gaaagttattttcaagctcaagctcaacgga |
24004677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 341 - 525
Target Start/End: Original strand, 24013224 - 24013417
Alignment:
| Q |
341 |
atgaataagataaaatgtgacgaaattgtttcagttatcaatagatataggtaa-cacattcgggatgtgctgaagttgaatttatggttgaactcagaa |
439 |
Q |
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| T |
24013224 |
atgaataagagagaaagtgaggaaactgtttcagctatcaatagatataggtaaacacatttgggatgttctgaagctgaatctatggctgaattcataa |
24013323 |
T |
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| Q |
440 |
atagcatacatcag-------ataccattaataaaagagaaaatagaataagaccataacttgcagaaggttg-tcattaagcccctcaaattg |
525 |
Q |
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| T |
24013324 |
atagcatacatcagatacctcataccactaataaaaaagtaaatagaataagaccataacttgcataaggttgctcattaagcccctcaaattg |
24013417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 347 - 411
Target Start/End: Original strand, 24004677 - 24004741
Alignment:
| Q |
347 |
aagataaaatgtgacgaaattgtttcagttatcaatagatataggtaacacattcgggatgtgct |
411 |
Q |
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| T |
24004677 |
aagataaaatgtgaggaaattgtttcagttatcaatagatataggtaacacattcgggatgtgct |
24004741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 454 - 533
Target Start/End: Original strand, 24004742 - 24004822
Alignment:
| Q |
454 |
ataccattaataaaagagaaaatagaataagaccataacttgcagaaggttg-tcattaagcccctcaaattgctgctcaa |
533 |
Q |
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| T |
24004742 |
ataccattaataaaaaagtaagtagaataagaccataacttgcataaggttgttcattaatcccctcaaattgctgctcaa |
24004822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 24013129 - 24013225
Alignment:
| Q |
209 |
cactttacctaataactctttaaatcaaagcaccaatgtgagatctgaaagttattttcaagctcaagctcaacggactgtgattttgtccagaaat |
305 |
Q |
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| T |
24013129 |
cactttatttaattactttttagatcaaagcactgatgtgacatctgaacgttattttccagctcaagctcaacggactgtgatttcgtccggaaat |
24013225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 24013041 - 24013096
Alignment:
| Q |
157 |
ataatttatttgtttcttggatgcatgttatgttttggacat-gcttttggagcac |
211 |
Q |
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| T |
24013041 |
ataatttatttgtttcttggatgcatgttatgttttggacatggcttttggagcac |
24013096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 24004340 - 24004401
Alignment:
| Q |
1 |
agcatttgatatcacaggaagtttggttagggcctaggggttgatggatgagacaatcagttaatttac |
69 |
Q |
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| T |
24004340 |
agcatttgatatcacaggaagtttggttagggc-------ttgatggatgagacaatcagttaatttac |
24004401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 24012774 - 24012841
Alignment:
| Q |
35 |
taggggttgatgg-atgagacaatcagttaatttactttctagcagttaatttaccttttgccattttc |
102 |
Q |
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| T |
24012774 |
taggggttgatgggatgagacaatcagt-aatttactttctgggagttaatttatattttgccattttc |
24012841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 23997650 - 23997688
Alignment:
| Q |
155 |
agataatttatttgtttcttggatgcatgttatgttttg |
193 |
Q |
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| T |
23997650 |
agataatttatttgttttttggatgcatgttttgttttg |
23997688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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