View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18278_high_18 (Length: 464)

Name: NF18278_high_18
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18278_high_18
NF18278_high_18
[»] chr5 (7 HSPs)
chr5 (197-464)||(10303508-10303775)
chr5 (319-464)||(10296161-10296306)
chr5 (423-464)||(10287811-10287851)
chr5 (197-226)||(35095879-35095908)
chr5 (197-233)||(37063170-37063207)
chr5 (197-225)||(7853604-7853632)
chr5 (197-286)||(26516185-26516272)
[»] chr8 (4 HSPs)
chr8 (14-220)||(43812271-43812477)
chr8 (197-285)||(39392757-39392843)
chr8 (197-233)||(14482139-14482176)
chr8 (194-226)||(2605964-2605996)
[»] chr7 (2 HSPs)
chr7 (198-286)||(28702644-28702733)
chr7 (196-224)||(15075181-15075209)
[»] chr4 (4 HSPs)
chr4 (117-225)||(41050642-41050751)
chr4 (239-286)||(7749218-7749265)
chr4 (197-233)||(3662286-3662322)
chr4 (197-225)||(45128406-45128434)
[»] scaffold0590 (1 HSPs)
scaffold0590 (197-286)||(1170-1257)
[»] scaffold0275 (1 HSPs)
scaffold0275 (197-286)||(2718-2805)
[»] chr6 (2 HSPs)
chr6 (197-225)||(7354150-7354178)
chr6 (189-225)||(11784123-11784159)
[»] chr2 (2 HSPs)
chr2 (189-225)||(6227697-6227733)
chr2 (194-233)||(13866826-13866866)
[»] chr1 (1 HSPs)
chr1 (194-233)||(870982-871022)


Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 197 - 464
Target Start/End: Complemental strand, 10303775 - 10303508
Alignment:
Q  197 attttatcttttgttatagaaatagtttaacataagccttttttatatgatacacacttatgctataagtgctttgttaagttgtttatcaaggaaaggt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10303775 attttatcttttgttatagaaatagtttaacataagcctttttaatatgatacacacttatgctataagtgcttcgttaagttgtttatcaaggaaaggt 10303676  T
Q  297 gcaagtttaactagctaaggcatcttattaagtcctatcttgcacagttcgtttttgaacatagcgaatagcttagtggtcattaagtcaagttagaata 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10303675 gcaagtttaactagctaaggcatcttattaagtcctatcttgcacaattcgtttttgaacatagcgtatagcttagtggtcattaagtcaagttagaata 10303576  T
Q  397 gagagcatgaatcaatcaataatcagaagtaaaaggagctatactatactataccttcccaagtaaat 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10303575 gagagcatgaatcaatcaataatcagaagtaaaaggagctatactatactataccttcccaagtaaat 10303508  T

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Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 319 - 464
Target Start/End: Complemental strand, 10296306 - 10296161
Alignment:
Q  319 tcttattaagtcctatcttgcacagttcgtttttgaacatagcgaatagcttagtggtcattaagtcaagttagaatagagagcatgaatcaatcaataa 418  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10296306 tcttattaagtcctatcttgcacaattcgtttttgaacatagcgaatagcttagtggtcattaagtcaagttagaatagagagcatgaatcaatcaataa 10296207  T
Q  419 tcagaagtaaaaggagctatactatactataccttcccaagtaaat 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10296206 tcagaagtaaaaggagctatactatactataccttcccaagtaaat 10296161  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Complemental strand, 10287851 - 10287811
Alignment:
Q  423 aagtaaaaggagctatactatactataccttcccaagtaaat 464  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  10287851 aagtaaaagtagctata-tatactataccttcccaagtaaat 10287811  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 35095879 - 35095908
Alignment:
Q  197 attttatcttttgttatagaaatagtttaa 226  Q
    ||||||||||||||||||||||||||||||    
T  35095879 attttatcttttgttatagaaatagtttaa 35095908  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 37063170 - 37063207
Alignment:
Q  197 attttatcttttgttatagaaatagttta-acataagc 233  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  37063170 attttatcttttgttatagaaatagtttatacataagc 37063207  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 7853632 - 7853604
Alignment:
Q  197 attttatcttttgttatagaaatagttta 225  Q
    |||||||||||||||||||||||||||||    
T  7853632 attttatcttttgttatagaaatagttta 7853604  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 26516272 - 26516185
Alignment:
Q  197 attttatcttttgttatagaaatagttta-acataagccttttttatatgatacacacttatgctataagtgctttgttaagttgtttatc 286  Q
    ||||||||||||||| ||||||||| ||| ||||||||     ||||||||||  | ||||||||||||| ||||  ||||||||||||||    
T  26516272 attttatcttttgttttagaaatagcttatacataagc---acttatatgataagcgcttatgctataagcgcttaattaagttgtttatc 26516185  T

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Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 43812271 - 43812477
Alignment:
Q  14 ccgcatgaatcattttggagttatacttggggtctgtctagattagcttatttgaacatatttaaggacataatagtttatcgaaacgacttatgatagg 113  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43812271 ccgcatgaatcattttggagttatacttggggtctgtttagattagtttatttgaacatatttaagggcataatagtttatcgaaacgacttatgatagg 43812370  T
Q  114 tcgataagctgtttttagcttatttccgtgaccttcccgaatagcttttgaaaacaccttatagcataaaagcagttaaattaattttatcttttgttat 213  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43812371 tccataagctgtttttagcttatttccgtgaccttcccgaatagcttttgaaaacaccttatagcataaaagcagttaaattaattttatcttttgttat 43812470  T
Q  214 agaaata 220  Q
    |||||||    
T  43812471 agaaata 43812477  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 285
Target Start/End: Original strand, 39392757 - 39392843
Alignment:
Q  197 attttatcttttgttatagaaatagttta-acataagccttttttatatgatacacacttatgctataagtgctttgttaagttgtttat 285  Q
    ||||||||||||||||||||||||||||| |||| ||||    ||||||||||  |||||||||||||| |||||  ||||||| |||||    
T  39392757 attttatcttttgttatagaaatagtttatacat-agcc--acttatatgataagcacttatgctataaatgcttaattaagttatttat 39392843  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 14482176 - 14482139
Alignment:
Q  197 attttatcttttgttatagaaatagttta-acataagc 233  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  14482176 attttatcttttgttatagaaatagtttatacataagc 14482139  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 2605996 - 2605964
Alignment:
Q  194 ttaattttatcttttgttatagaaatagtttaa 226  Q
    ||||||||||||||||| |||||||||||||||    
T  2605996 ttaattttatcttttgtcatagaaatagtttaa 2605964  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 28702733 - 28702644
Alignment:
Q  198 ttttatcttttgttatagaaatagttta-acataagccttttttatatgatacacacttatgctataagtgctttgttaagttgtttatc 286  Q
    |||||||||||||||||||||||| ||| ||||||    |  || |||| ||| ||||||||||||||||||||  ||||||||||||||    
T  28702733 ttttatcttttgttatagaaatagcttatacataaaaaatacttgtatggtacgcacttatgctataagtgcttaattaagttgtttatc 28702644  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 15075181 - 15075209
Alignment:
Q  196 aattttatcttttgttatagaaatagttt 224  Q
    |||||||||||||||||||||||||||||    
T  15075181 aattttatcttttgttatagaaatagttt 15075209  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 41050751 - 41050642
Alignment:
Q  117 ataagctgtttttagcttatttccgtgaccttcccgaatagcttttgaaaacaccttatagcataaaagcagttaaa-ttaattttatcttttgttatag 215  Q
    ||||||||||||||||||||||| || |  |  || | ||| || |||||||| |||||| | |||||  ||||||| || |||| ||||||||||||||    
T  41050751 ataagctgtttttagcttatttcggtaagatctccaattagtttatgaaaacagcttataacgtaaaaaaagttaaacttcatttcatcttttgttatag 41050652  T
Q  216 aaatagttta 225  Q
    ||||||||||    
T  41050651 aaatagttta 41050642  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 7749218 - 7749265
Alignment:
Q  239 ttatatgatacacacttatgctataagtgctttgttaagttgtttatc 286  Q
    ||||||| || |||||||||||||||| |||| |||||||||||||||    
T  7749218 ttatatggtaaacacttatgctataagagcttagttaagttgtttatc 7749265  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 3662322 - 3662286
Alignment:
Q  197 attttatcttttgttatagaaatagtttaacataagc 233  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  3662322 attttatcttttgttataggaatagtttatcataagc 3662286  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 45128406 - 45128434
Alignment:
Q  197 attttatcttttgttatagaaatagttta 225  Q
    |||||||||||||||||||||||||||||    
T  45128406 attttatcttttgttatagaaatagttta 45128434  T

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Target: scaffold0590 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 1170 - 1257
Alignment:
Q  197 attttatcttttgttatagaaatagttta-acataagccttttttatatgatacacacttatgctataagtgctttgttaagttgtttatc 286  Q
    ||||||||||||||||||||||||| ||| ||||||||     |||||||||| ||  ||||||||||||| |||  ||||||||||||||    
T  1170 attttatcttttgttatagaaatagcttatacataagc---acttatatgatagacgtttatgctataagtacttaattaagttgtttatc 1257  T

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Target: scaffold0275 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 2805 - 2718
Alignment:
Q  197 attttatcttttgttatagaaatagttta-acataagccttttttatatgatacacacttatgctataagtgctttgttaagttgtttatc 286  Q
    ||||||||||||||||||||||||| ||| ||||||||     |||||||||| ||  ||||||||||||| |||  ||||||||||||||    
T  2805 attttatcttttgttatagaaatagcttatacataagc---acttatatgatagacgtttatgctataagtacttaattaagttgtttatc 2718  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 7354178 - 7354150
Alignment:
Q  197 attttatcttttgttatagaaatagttta 225  Q
    |||||||||||||||||||||||||||||    
T  7354178 attttatcttttgttatagaaatagttta 7354150  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 11784123 - 11784159
Alignment:
Q  189 ttaaattaattttatcttttgttatagaaatagttta 225  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  11784123 ttaatttaattttatcatttgttatagaaatagttta 11784159  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 6227733 - 6227697
Alignment:
Q  189 ttaaattaattttatcttttgttatagaaatagttta 225  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  6227733 ttaatttaattttatcttttgttatataaatagttta 6227697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 13866866 - 13866826
Alignment:
Q  194 ttaattttatcttttgttatagaaatagttta-acataagc 233  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  13866866 ttaattttatcttttgctatagaaatagtttatacataagc 13866826  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 871022 - 870982
Alignment:
Q  194 ttaattttatcttttgttatagaaatagttta-acataagc 233  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  871022 ttaattttatcttttgttataaaaatagtttatacataagc 870982  T

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