View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18278_high_19 (Length: 453)

Name: NF18278_high_19
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18278_high_19
NF18278_high_19
[»] chr8 (26 HSPs)
chr8 (282-435)||(3961102-3961255)
chr8 (20-93)||(3961550-3961625)
chr8 (164-207)||(4611554-4611597)
chr8 (164-206)||(11803279-11803321)
chr8 (164-206)||(11927083-11927125)
chr8 (147-201)||(18964180-18964234)
chr8 (164-201)||(4786340-4786377)
chr8 (137-206)||(15816126-15816195)
chr8 (160-205)||(22493510-22493555)
chr8 (164-201)||(26902177-26902214)
chr8 (165-201)||(8847277-8847313)
chr8 (172-207)||(4122245-4122280)
chr8 (164-203)||(7658483-7658522)
chr8 (164-206)||(11944685-11944727)
chr8 (171-201)||(28384996-28385026)
chr8 (164-201)||(13844598-13844635)
chr8 (164-201)||(14134719-14134756)
chr8 (164-201)||(33382021-33382058)
chr8 (164-197)||(34897105-34897138)
chr8 (117-201)||(3951538-3951627)
chr8 (173-201)||(8293854-8293882)
chr8 (166-206)||(16867202-16867242)
chr8 (137-201)||(22595987-22596051)
chr8 (162-206)||(25566859-25566903)
chr8 (164-200)||(31236580-31236616)
chr8 (137-201)||(43737813-43737877)
[»] chr2 (25 HSPs)
chr2 (137-201)||(20242729-20242793)
chr2 (137-207)||(34784978-34785048)
chr2 (137-207)||(41843434-41843504)
chr2 (137-207)||(36096371-36096441)
chr2 (124-194)||(15909641-15909712)
chr2 (137-207)||(12668419-12668489)
chr2 (129-206)||(36756341-36756419)
chr2 (165-206)||(28524447-28524488)
chr2 (165-201)||(5367213-5367249)
chr2 (137-201)||(11223865-11223929)
chr2 (137-201)||(19536399-19536464)
chr2 (172-207)||(22550248-22550283)
chr2 (164-203)||(31808097-31808136)
chr2 (172-207)||(35056896-35056931)
chr2 (172-203)||(39279703-39279734)
chr2 (171-206)||(44860347-44860382)
chr2 (129-201)||(21624250-21624324)
chr2 (170-200)||(23718052-23718082)
chr2 (170-200)||(24105724-24105754)
chr2 (164-202)||(44605140-44605178)
chr2 (164-201)||(18889593-18889630)
chr2 (172-201)||(34691807-34691836)
chr2 (172-201)||(34714219-34714248)
chr2 (164-201)||(38355889-38355926)
chr2 (164-208)||(18420429-18420473)
[»] chr5 (25 HSPs)
chr5 (137-207)||(6401491-6401561)
chr5 (137-201)||(30099040-30099104)
chr5 (144-204)||(39758272-39758332)
chr5 (137-207)||(21814254-21814324)
chr5 (162-216)||(16374328-16374383)
chr5 (137-207)||(21522743-21522813)
chr5 (137-207)||(21533309-21533379)
chr5 (162-207)||(38749559-38749604)
chr5 (164-207)||(3966523-3966566)
chr5 (142-201)||(32426871-32426930)
chr5 (164-207)||(41091253-41091296)
chr5 (165-207)||(6035503-6035545)
chr5 (164-206)||(6471886-6471928)
chr5 (141-207)||(21542027-21542093)
chr5 (162-196)||(35904663-35904697)
chr5 (164-206)||(36838563-36838605)
chr5 (117-201)||(8419999-8420084)
chr5 (164-201)||(28588676-28588713)
chr5 (164-201)||(30502390-30502427)
chr5 (164-201)||(30542733-30542770)
chr5 (137-201)||(6247615-6247679)
chr5 (164-204)||(23015988-23016028)
chr5 (137-201)||(33178018-33178082)
chr5 (163-207)||(37328840-37328884)
chr5 (137-201)||(42029745-42029809)
[»] chr1 (42 HSPs)
chr1 (137-219)||(24577170-24577252)
chr1 (117-199)||(25934589-25934671)
chr1 (119-211)||(9828019-9828111)
chr1 (117-203)||(13997855-13997942)
chr1 (141-199)||(34315709-34315767)
chr1 (137-201)||(1815250-1815314)
chr1 (164-203)||(1864880-1864919)
chr1 (164-207)||(44482250-44482293)
chr1 (129-207)||(5944265-5944346)
chr1 (164-206)||(34371733-34371775)
chr1 (162-207)||(1486705-1486750)
chr1 (137-198)||(10577740-10577801)
chr1 (164-209)||(20157344-20157389)
chr1 (164-201)||(30749860-30749897)
chr1 (164-201)||(30771311-30771348)
chr1 (117-201)||(37598804-37598888)
chr1 (164-207)||(5376496-5376539)
chr1 (162-201)||(5898268-5898307)
chr1 (164-207)||(7918207-7918250)
chr1 (164-203)||(10233273-10233312)
chr1 (164-207)||(25361906-25361949)
chr1 (164-207)||(34712379-34712422)
chr1 (164-206)||(10572586-10572628)
chr1 (162-207)||(6612167-6612212)
chr1 (164-197)||(17705592-17705625)
chr1 (162-207)||(17754329-17754374)
chr1 (162-203)||(21378596-21378637)
chr1 (164-201)||(23636051-23636088)
chr1 (162-207)||(26837738-26837783)
chr1 (162-207)||(35919272-35919317)
chr1 (164-201)||(36878481-36878518)
chr1 (164-201)||(40181891-40181928)
chr1 (162-207)||(47989515-47989560)
chr1 (172-201)||(52903277-52903306)
chr1 (165-201)||(13436479-13436515)
chr1 (137-201)||(19058858-19058922)
chr1 (137-201)||(22881618-22881682)
chr1 (163-203)||(24462676-24462716)
chr1 (162-210)||(30173755-30173803)
chr1 (171-219)||(40285638-40285686)
chr1 (117-201)||(43492496-43492580)
chr1 (162-206)||(48148034-48148078)
[»] chr6 (30 HSPs)
chr6 (131-207)||(18367823-18367899)
chr6 (117-201)||(5626698-5626781)
chr6 (137-207)||(16488586-16488656)
chr6 (164-209)||(9025488-9025533)
chr6 (162-201)||(7027260-7027299)
chr6 (137-207)||(8931598-8931668)
chr6 (164-201)||(7265595-7265632)
chr6 (162-207)||(9522909-9522954)
chr6 (137-201)||(34595127-34595191)
chr6 (164-207)||(7086815-7086858)
chr6 (170-209)||(9027204-9027243)
chr6 (164-207)||(26562709-26562752)
chr6 (164-206)||(9195751-9195793)
chr6 (164-202)||(9658899-9658937)
chr6 (137-207)||(10770670-10770740)
chr6 (137-207)||(16766690-16766760)
chr6 (129-202)||(16833292-16833366)
chr6 (164-201)||(7377999-7378036)
chr6 (117-201)||(7801158-7801243)
chr6 (164-201)||(9617454-9617491)
chr6 (164-201)||(9629403-9629440)
chr6 (164-197)||(11591876-11591909)
chr6 (164-201)||(13360374-13360411)
chr6 (164-197)||(13851756-13851789)
chr6 (164-201)||(19040372-19040409)
chr6 (172-201)||(21924937-21924966)
chr6 (162-206)||(7973672-7973716)
chr6 (137-201)||(7977832-7977896)
chr6 (139-207)||(17327651-17327719)
chr6 (171-207)||(34073343-34073379)
[»] chr3 (26 HSPs)
chr3 (121-201)||(34910294-34910374)
chr3 (137-201)||(35222931-35222995)
chr3 (129-207)||(14209098-14209176)
chr3 (120-201)||(13414441-13414526)
chr3 (162-201)||(7928468-7928507)
chr3 (117-201)||(14027976-14028064)
chr3 (162-201)||(40993337-40993376)
chr3 (162-204)||(30184105-30184147)
chr3 (129-201)||(16000018-16000091)
chr3 (160-201)||(38731234-38731275)
chr3 (164-203)||(3962793-3962832)
chr3 (172-207)||(8039831-8039866)
chr3 (142-201)||(13845527-13845586)
chr3 (164-195)||(16192758-16192789)
chr3 (172-206)||(17005616-17005650)
chr3 (137-203)||(20503458-20503524)
chr3 (164-201)||(8789552-8789589)
chr3 (164-201)||(20691339-20691376)
chr3 (164-201)||(25093522-25093559)
chr3 (162-207)||(25948883-25948928)
chr3 (162-203)||(29508462-29508503)
chr3 (164-204)||(10690261-10690301)
chr3 (137-201)||(10954945-10955009)
chr3 (162-206)||(15314873-15314917)
chr3 (137-201)||(18426942-18427006)
chr3 (163-203)||(24633401-24633441)
[»] chr7 (25 HSPs)
chr7 (142-189)||(1656674-1656721)
chr7 (164-201)||(5835267-5835304)
chr7 (164-207)||(7328687-7328730)
chr7 (164-207)||(15902842-15902885)
chr7 (164-207)||(17307913-17307956)
chr7 (139-201)||(18213035-18213098)
chr7 (164-207)||(22602706-22602749)
chr7 (151-201)||(39138451-39138501)
chr7 (160-201)||(640129-640170)
chr7 (162-207)||(18013070-18013115)
chr7 (162-219)||(18039017-18039074)
chr7 (118-201)||(9408336-9408420)
chr7 (164-199)||(27732243-27732278)
chr7 (164-202)||(17851451-17851489)
chr7 (172-206)||(23128658-23128692)
chr7 (137-207)||(24339635-24339705)
chr7 (164-209)||(5233649-5233694)
chr7 (164-201)||(9482954-9482991)
chr7 (164-197)||(12278855-12278888)
chr7 (164-201)||(20549811-20549848)
chr7 (172-212)||(3142069-3142109)
chr7 (161-201)||(9949073-9949112)
chr7 (164-196)||(22868062-22868094)
chr7 (170-209)||(23849451-23849491)
chr7 (163-203)||(41020515-41020555)
[»] chr4 (14 HSPs)
chr4 (164-212)||(46160916-46160964)
chr4 (137-207)||(5414168-5414238)
chr4 (162-207)||(22234886-22234931)
chr4 (93-190)||(32273539-32273636)
chr4 (162-201)||(40179638-40179677)
chr4 (162-201)||(54580025-54580064)
chr4 (160-202)||(1213222-1213264)
chr4 (164-198)||(40613470-40613504)
chr4 (160-201)||(5555134-5555175)
chr4 (164-201)||(5775360-5775397)
chr4 (114-154)||(24543950-24543991)
chr4 (162-203)||(29205462-29205503)
chr4 (129-207)||(12708130-12708210)
chr4 (164-200)||(16189729-16189765)
[»] scaffold0050 (1 HSPs)
scaffold0050 (162-201)||(70296-70335)
[»] scaffold0171 (1 HSPs)
scaffold0171 (162-207)||(23438-23483)
[»] scaffold0020 (1 HSPs)
scaffold0020 (164-209)||(135306-135351)
[»] scaffold0623 (1 HSPs)
scaffold0623 (137-201)||(5998-6062)
[»] scaffold0116 (1 HSPs)
scaffold0116 (137-201)||(9891-9955)
[»] scaffold0110 (1 HSPs)
scaffold0110 (171-207)||(28877-28913)
[»] scaffold0123 (1 HSPs)
scaffold0123 (164-199)||(44529-44564)
[»] scaffold0022 (1 HSPs)
scaffold0022 (164-207)||(99913-99956)
[»] scaffold0036 (1 HSPs)
scaffold0036 (164-206)||(9744-9786)
[»] scaffold1528 (1 HSPs)
scaffold1528 (162-207)||(1053-1098)
[»] scaffold0004 (1 HSPs)
scaffold0004 (155-196)||(101011-101052)
[»] scaffold0044 (1 HSPs)
scaffold0044 (164-200)||(53200-53236)
[»] scaffold0025 (1 HSPs)
scaffold0025 (162-206)||(23788-23832)


Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 282 - 435
Target Start/End: Complemental strand, 3961255 - 3961102
Alignment:
Q  282 gagaggagagtgtttgattgtatttagaaaagctcggccccctagaaggttgtggatttttcttggaaacttctcctagatcggattccaactagagtca 381  Q
    ||||||||||||||||||||||||| ||||||||| || ||||  ||||| |||| ||||||||||||||||||||||||| ||||||||||  ||||||    
T  3961255 gagaggagagtgtttgattgtatttggaaaagctcagctccctcaaaggtcgtggctttttcttggaaacttctcctagattggattccaacgcgagtca 3961156  T
Q  382 atcttcaaaggcggattattcttcctccggatgcttggtcgttatgtgtgtttt 435  Q
    ||||||||||||||  |||||||||||||||||||| || ||| || |||||||    
T  3961155 atcttcaaaggcgggatattcttcctccggatgcttcgttgttgtgcgtgtttt 3961102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 3961625 - 3961550
Alignment:
Q  20 acagattgaatgtttttagtaaatattcaaatttctatttttt--caaaaatatattctccttaattagtcattca 93  Q
    ||||||||||| |||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||    
T  3961625 acagattgaatatttttagtaaatattcaaatatctattttttttcaaaaatatattctccttaattagtcattca 3961550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 4611554 - 4611597
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    |||||||||||||||||||||||||||||| |||||| ||||||    
T  4611554 aaaataacataattcagtgtaattatatgtctcggtgctgtgtc 4611597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 11803279 - 11803321
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||| |||||||||||||||||||||||||| ||||||||||    
T  11803279 aaaatcacataattcagtgtaattatatgtgttggtgttgtgt 11803321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 11927125 - 11927083
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  11927125 aaaatcacataattcagtgtaattatatgtgtcggtgtcgtgt 11927083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 18964180 - 18964234
Alignment:
Q  147 acaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||| ||| ||| ||||| |||||||||| |||||||||||||||||||||    
T  18964180 acaactaatttttttagaaaatcacataattcaatgtaattatatgtgtcggtgt 18964234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 4786377 - 4786340
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  4786377 aaaatcacataattcagtgtaattatatgtgtcggtgt 4786340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 15816195 - 15816126
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||||||||||||||||   | | ||||||| |||||||| |||||||||||| |||||||||| ||||    
T  15816195 acacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattataagtgtcggtgtcgtgt 15816126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 22493510 - 22493555
Alignment:
Q  160 ttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtg 205  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||||    
T  22493510 ttaaaaaatcacataattcagtgtaatcatatatgtcggtgttgtg 22493555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 26902214 - 26902177
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  26902214 aaaatcacataattcagtgtaattatatgtgtcggtgt 26902177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 8847277 - 8847313
Alignment:
Q  165 aaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||| ||||||||||||||||||||||||||||||||    
T  8847277 aaatcacataattcagtgtaattatatgtgtcggtgt 8847313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 4122280 - 4122245
Alignment:
Q  172 ataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    |||||||| |||||||||||||||||||||||||||    
T  4122280 ataattcattgtaattatatgtgtcggtgttgtgtc 4122245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 7658483 - 7658522
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttg 203  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  7658483 aaaattacataattcagtgtaattatatttgtcggtgttg 7658522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 11944685 - 11944727
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||| |||||| ||||||||||||||||||||||||| ||||    
T  11944685 aaaatcacataactcagtgtaattatatgtgtcggtgtcgtgt 11944727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 201
Target Start/End: Complemental strand, 28385026 - 28384996
Alignment:
Q  171 cataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||||||||||||||||||||||||||    
T  28385026 cataattcagtgtaattatatgtgtcggtgt 28384996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 13844635 - 13844598
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  13844635 aaaatcacataattgagtgtaattatatgtgtcggtgt 13844598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 14134719 - 14134756
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  14134719 aaaatcacataattcagtgtaattatatatgtcggtgt 14134756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 33382058 - 33382021
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  33382058 aaaatgacataattcagagtaattatatgtgtcggtgt 33382021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 34897105 - 34897138
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcg 197  Q
    ||||| ||||||||||||||||||||||||||||    
T  34897105 aaaatcacataattcagtgtaattatatgtgtcg 34897138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 3951627 - 3951538
Alignment:
Q  117 ggacacggacaccagacactacacg----ccgacacaactaaatttgttaaaaaa-taacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||||||||||| || |||||    |||||||| |||||||| | |||||| | ||| ||| ||||||| ||||||||||||||||    
T  3951627 ggacacggacaccagatacgacacggacaccgacacagctaaatttttaaaaaaaatcacaaaatgcagtgtacttatatgtgtcggtgt 3951538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 8293854 - 8293882
Alignment:
Q  173 taattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||||||||||||||||||||||||    
T  8293854 taattcagtgtaattatatgtgtcggtgt 8293882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 16867242 - 16867202
Alignment:
Q  166 aataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    |||||||||||| |||||||||||| |||||||||| ||||    
T  16867242 aataacataatttagtgtaattataagtgtcggtgtcgtgt 16867202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 22595987 - 22596051
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||| ||||   | | ||||||||||||||||||||||||||| | |||| |||||    
T  22595987 acacgccgacacagctaataatttaaaaaaataacataattcagtgtaattacaagtgttggtgt 22596051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 25566859 - 25566903
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||    
T  25566859 aaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 25566903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 31236616 - 31236580
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtg 200  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  31236616 aaaatcacataattcaatgtaattatatgtgtcggtg 31236580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 43737877 - 43737813
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||| |||| ||||||||  |  ||||| ||| ||| ||||||||||||||||||||||||    
T  43737877 acacgccggcacagctaaattttcttgaaaatcacaaaatacagtgtaattatatgtgtcggtgt 43737813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 20242793 - 20242729
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||||||||||||    
T  20242793 acacgccgacacaactaatttttttagaaaatcacataattcagtgtaattatatgtgtcggtgt 20242729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 34785048 - 34784978
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    |||| ||||||||||||| ||| ||| ||||| |||||||| ||||||||||||||||||||||| |||||    
T  34785048 acacaccgacacaactaatttttttagaaaatcacataatttagtgtaattatatgtgtcggtgtcgtgtc 34784978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 41843434 - 41843504
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||||| |||||||||| |||  |||| ||||||||| || |||||||||||||||||||||||||    
T  41843434 acacgccgacaaaactaaattttttaggaaatcacataattcggtataattatatgtgtcggtgttgtgtc 41843504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 36096441 - 36096371
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||||||| |||||||| ||| ||||| ||| ||| |||||||||||||| ||||||||| |||||    
T  36096441 acacgccgacacagctaaattttttagaaaatcacaaaatgcagtgtaattatatttgtcggtgtcgtgtc 36096371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 15909712 - 15909641
Alignment:
Q  124 gacaccagacact-acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtg 194  Q
    ||||||||||||| ||||||||| ||| ||||| || | | ||||| |||||||||||||||||||||||||    
T  15909712 gacaccagacactgacacgccgatacagctaaaattttgagaaaattacataattcagtgtaattatatgtg 15909641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 12668489 - 12668419
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||||| ||||||   | | ||||||| ||||||||||||||||||||| |||||||||| |||||    
T  12668489 acacgccgacataactaataatttgaaaaaatgacataattcagtgtaattataagtgtcggtgtcgtgtc 12668419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 36756419 - 36756341
Alignment:
Q  129 cagacact-acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    |||||||| ||||| ||||||||||||   | | || |||||||||||||||||||||||||| |||||||||| ||||    
T  36756419 cagacactgacacgtcgacacaactaataatttgaagaaataacataattcagtgtaattataagtgtcggtgtcgtgt 36756341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 28524447 - 28524488
Alignment:
Q  165 aaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    |||| |||||||||||||||||||||||||||| ||||||||    
T  28524447 aaatcacataattcagtgtaattatatgtgtcgttgttgtgt 28524488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 5367213 - 5367249
Alignment:
Q  165 aaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||| ||||||||||||||||||||||||||||||||    
T  5367213 aaatcacataattcagtgtaattatatgtgtcggtgt 5367249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 11223929 - 11223865
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||| |||||| ||||  || | ||||||||||||||||||||||||||| | ||||||||||    
T  11223929 acacgctgacacagctaatattttgaaaaaataacataattcagtgtaattacaagtgtcggtgt 11223865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 19536464 - 19536399
Alignment:
Q  137 acacgccgacacaactaa--atttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||||||||  |||||  ||||||| ||||||||||||||||||| | ||||||||||    
T  19536464 acacgccgacacaactaataatttga-aaaaaatcacataattcagtgtaattacaagtgtcggtgt 19536399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 22550283 - 22550248
Alignment:
Q  172 ataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||||||||||||||||||| ||||||||||    
T  22550283 ataattcagtgtaattatatgtgtcagtgttgtgtc 22550248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 31808097 - 31808136
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttg 203  Q
    ||||| ||||||||||||||||||||||||||| ||||||    
T  31808097 aaaatcacataattcagtgtaattatatgtgtcagtgttg 31808136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 35056896 - 35056931
Alignment:
Q  172 ataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    |||||||||||||||||||||||||||||| |||||    
T  35056896 ataattcagtgtaattatatgtgtcggtgtcgtgtc 35056931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 203
Target Start/End: Original strand, 39279703 - 39279734
Alignment:
Q  172 ataattcagtgtaattatatgtgtcggtgttg 203  Q
    ||||||||||||||||||||||||||||||||    
T  39279703 ataattcagtgtaattatatgtgtcggtgttg 39279734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 44860347 - 44860382
Alignment:
Q  171 cataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||||||||||||||||||||||||||||| ||||    
T  44860347 cataattcagtgtaattatatgtgtcggtgtcgtgt 44860382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 21624250 - 21624324
Alignment:
Q  129 cagacact-acacgccgacacaactaa-atttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||| ||||||||||||| |||| | || | |||||||| |||||||||||||||||| | ||||||||||    
T  21624250 cagacactgacacgccgacacagctaataattttaaaaaaatagcataattcagtgtaattacaagtgtcggtgt 21624324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 200
Target Start/End: Original strand, 23718052 - 23718082
Alignment:
Q  170 acataattcagtgtaattatatgtgtcggtg 200  Q
    |||||||||||||||||||||||||||||||    
T  23718052 acataattcagtgtaattatatgtgtcggtg 23718082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 200
Target Start/End: Original strand, 24105724 - 24105754
Alignment:
Q  170 acataattcagtgtaattatatgtgtcggtg 200  Q
    |||||||||||||||||||||||||||||||    
T  24105724 acataattcagtgtaattatatgtgtcggtg 24105754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 44605178 - 44605140
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgtt 202  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  44605178 aaaataacataattcaatgtaattacatgtgtcggtgtt 44605140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 18889630 - 18889593
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  18889630 aaaatcacataattcagtgtaatcatatgtgtcggtgt 18889593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 34691836 - 34691807
Alignment:
Q  172 ataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||||||||||||||||||||    
T  34691836 ataattcagtgtaattatatgtgtcggtgt 34691807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 34714248 - 34714219
Alignment:
Q  172 ataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||||||||||||||||||||    
T  34714248 ataattcagtgtaattatatgtgtcggtgt 34714219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 38355926 - 38355889
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  38355926 aaaatcacataattcagtgtgattatatgtgtcggtgt 38355889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 18420473 - 18420429
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtcc 208  Q
    ||||| |||||||||| || ||||||| |||||||||||||||||    
T  18420473 aaaatcacataattcaatgcaattataagtgtcggtgttgtgtcc 18420429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 6401491 - 6401561
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    |||||||||||||||||||||| ||| ||||| ||| ||| |||||||||||||||||||||||| |||||    
T  6401491 acacgccgacacaactaaattttttagaaaatcacaaaatacagtgtaattatatgtgtcggtgtcgtgtc 6401561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 30099104 - 30099040
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||||||||||||||||| ||||| |||  |||||||| ||||||||||||||||||||||    
T  30099104 acacgccgacacaactaaattttttaaacaatcgcataattctgtgtaattatatgtgtcggtgt 30099040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 39758272 - 39758332
Alignment:
Q  144 gacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgt 204  Q
    |||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||| ||||    
T  39758272 gacacagctaaattttttagaaaatcacataattcagtgtaattatatgtgtcggtattgt 39758332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 21814254 - 21814324
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||||||| |||| ||| ||| ||||| ||| ||| |||||||||||||||||||||||| |||||    
T  21814254 acacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtgtc 21814324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 16374383 - 16374328
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc-cgtgcttca 216  Q
    |||||||||||||| |||||||||||| |||||||||||| ||||| |||||||||    
T  16374383 aaaaaataacataaatcagtgtaattacatgtgtcggtgtcgtgtcacgtgcttca 16374328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 21522743 - 21522813
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||||||| ||||   | ||||||||||||||||||||||||||||| |  ||||||||| |||||    
T  21522743 acacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtc 21522813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 21533309 - 21533379
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||||||| ||||   | ||||||||||||||||||||||||||||| |  ||||||||| |||||    
T  21533309 acacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtc 21533379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 38749604 - 38749559
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||| |||||||||| ||||||||||||||| |||||||||||    
T  38749604 aaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtc 38749559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 3966523 - 3966566
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||    
T  3966523 aaaatcacacaattcagtgtaattatatgtgtcggtgtcgtgtc 3966566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 32426930 - 32426871
Alignment:
Q  142 ccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||  |||||||| ||| ||||| |||||||||| ||||||||| |||||||||||    
T  32426930 ccgacacggctaaattttttagaaaatcacataattcattgtaattatttgtgtcggtgt 32426871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 41091296 - 41091253
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||    
T  41091296 aaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtc 41091253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 6035503 - 6035545
Alignment:
Q  165 aaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    |||||| |||||||||||||||||||| ||||||||| |||||    
T  6035503 aaataatataattcagtgtaattatatttgtcggtgtcgtgtc 6035545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 6471928 - 6471886
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||    
T  6471928 aaaatcacataattcagtgtaattatatgtgtgggtgtcgtgt 6471886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 21542027 - 21542093
Alignment:
Q  141 gccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||||||||   | | |||| |||||||||||||||||||||| | |||||||||| |||||    
T  21542027 gccgacacaactaataatttaaaaagataacataattcagtgtaattacaagtgtcggtgtcgtgtc 21542093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 35904663 - 35904697
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtc 196  Q
    |||||||||| ||||||||||||||||||||||||    
T  35904663 aaaaaataacttaattcagtgtaattatatgtgtc 35904697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 36838563 - 36838605
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||| |||||||| ||||||||||||||||||||||| ||||    
T  36838563 aaaattacataatttagtgtaattatatgtgtcggtgtcgtgt 36838605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 8419999 - 8420084
Alignment:
Q  117 ggacacggacaccagacact-acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||| |||| | ||||||||||| | ||||   | | |||||||||||||||||| |||||||| | ||||||||||    
T  8419999 ggacacggacaccggacaatgacacgccgacatagctaataatttgaaaaaataacataattcaatgtaattacaagtgtcggtgt 8420084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 28588713 - 28588676
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  28588713 aaaatcacataattcagtgtaattataggtgtcggtgt 28588676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 30502427 - 30502390
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| || |||||||||||||||||||||||||||||    
T  30502427 aaaatcacttaattcagtgtaattatatgtgtcggtgt 30502390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 30542770 - 30542733
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| || |||||||||||||||||||||||||||||    
T  30542770 aaaatcacttaattcagtgtaattatatgtgtcggtgt 30542733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 6247615 - 6247679
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||| ||||   | | ||||||| ||||||||||||||||||| | ||||||||||    
T  6247615 acacgccgacacatctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgt 6247679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 23016028 - 23015988
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgt 204  Q
    ||||| ||||||||||||||||||||| |||||| ||||||    
T  23016028 aaaatcacataattcagtgtaattataggtgtcgatgttgt 23015988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 33178018 - 33178082
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||||||||   | | ||||||| |||||||| |||||||||| | ||||||||||    
T  33178018 acacgccgacacaactaataatttaaaaaaatcacataatttagtgtaattacaagtgtcggtgt 33178082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 37328884 - 37328840
Alignment:
Q  163 aaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    |||||| ||| ||||||||||||||| |||||||||||| |||||    
T  37328884 aaaaatcacaaaattcagtgtaattacatgtgtcggtgtcgtgtc 37328840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 42029745 - 42029809
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||||||||| ||||    ||| ||||| |||||||||| ||||||||||||| |||||||    
T  42029745 acacgccgacacaattaaaaaatttagaaaatcacataattcaatgtaattatatgtatcggtgt 42029809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 24577252 - 24577170
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtccgtgcttcatag 219  Q
    |||||| |||||||||||   | | ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||    
T  24577252 acacgctgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtccgtgcttcatag 24577170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 25934589 - 25934671
Alignment:
Q  117 ggacacggacaccagacactacacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggt 199  Q
    ||||||||||||| ||||  ||||||||||||| ||||||||  || ||||| ||| ||| ||||||||||||||||||||||    
T  25934589 ggacacggacaccggacatgacacgccgacacagctaaattttctagaaaatcacaaaatacagtgtaattatatgtgtcggt 25934671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 9828019 - 9828111
Alignment:
Q  119 acacggacaccagacactacacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtccgtg 211  Q
    |||| |||||| ||||| |||||||||||| |||||   | | | ||||| |||||||||||||||||| ||||||||||||| |||||||||    
T  9828019 acacagacaccggacacgacacgccgacaccactaataatttgataaaatcacataattcagtgtaattttatgtgtcggtgtcgtgtccgtg 9828111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 13997855 - 13997942
Alignment:
Q  117 ggacacggacaccagacact-acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttg 203  Q
    ||||| ||| |||||||||| ||||||||||||   ||| | | | ||||||| ||||||||||||||||||||||||||||||||||    
T  13997855 ggacatggataccagacactgacacgccgacaccgttaattatttaaaaaaatcacataattcagtgtaattatatgtgtcggtgttg 13997942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 34315709 - 34315767
Alignment:
Q  141 gccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggt 199  Q
    ||||||||| |||||||| ||||||||  ||||||||| ||||||||||||||||||||    
T  34315709 gccgacacagctaaattttttaaaaaactacataattcggtgtaattatatgtgtcggt 34315767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 1815250 - 1815314
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||||||||| ||| | | ||||||||| ||||||||||||||||||| | ||||||||||    
T  1815250 acacgccgacacaaataattattttaaaaaatcacataattcagtgtaattacaagtgtcggtgt 1815314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 1864919 - 1864880
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttg 203  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  1864919 aaaatcacataattcagtgtaattatatgtgtcggtgttg 1864880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 44482250 - 44482293
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||| |||||||||||||||||||||||||||||||| |||||    
T  44482250 aaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtc 44482293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 5944265 - 5944346
Alignment:
Q  129 cagacact-acacgccgacacaactaa--atttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    |||||||| |||||||| |||| ||||  |||||  ||||||| ||||||||||||||||||||| |||||||||| |||||    
T  5944265 cagacactgacacgccgccacagctaataatttgaaaaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtc 5944346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 34371733 - 34371775
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  34371733 aaaatcacataattcagtgtaattatatgtgtcggtgtcgtgt 34371775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 1486750 - 1486705
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||||    
T  1486750 aaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtc 1486705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 10577801 - 10577740
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcgg 198  Q
    ||||||||||||| |||| ||| ||| ||||| ||| ||| |||||||||||||||||||||    
T  10577801 acacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcgg 10577740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 20157389 - 20157344
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtccg 209  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||||    
T  20157389 aaaatcacataattcagtgtaatcatatgtgtcggtgtcgtgtccg 20157344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 30749860 - 30749897
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  30749860 aaaatcacataattcagtgtaattatatgtgtcggtgt 30749897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 30771311 - 30771348
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  30771311 aaaatcacataattcagtgtaattatatgtgtcggtgt 30771348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 37598804 - 37598888
Alignment:
Q  117 ggacacggacaccagacact-acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||| |||||| |||||| ||||||||||||||||||   | | ||||||| ||| ||||||||||||||||| ||||||||||    
T  37598804 ggacacagacaccggacactgacacgccgacacaactaataatttgaaaaaatcaca-aattcagtgtaattataagtgtcggtgt 37598888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 5376539 - 5376496
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||||||||||||||||||| | |||||||||| |||||    
T  5376539 aaaataacataattcagtgtaattaaaagtgtcggtgtcgtgtc 5376496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 5898307 - 5898268
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  5898307 aaaaaatcacataattcagtgtaattatatgcgtcggtgt 5898268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 7918250 - 7918207
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||    
T  7918250 aaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtc 7918207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 10233273 - 10233312
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttg 203  Q
    ||||| ||||||||||||||||||||||||||| ||||||    
T  10233273 aaaatcacataattcagtgtaattatatgtgtctgtgttg 10233312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 25361906 - 25361949
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||    
T  25361906 aaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtc 25361949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 34712422 - 34712379
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    |||||||||||||| |||||||||||||||||| |||| |||||    
T  34712422 aaaataacataatttagtgtaattatatgtgtcagtgtcgtgtc 34712379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 10572628 - 10572586
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||| ||||||||| ||||||||| |||||||||||||||||    
T  10572628 aaaatcacataattcggtgtaattaaatgtgtcggtgttgtgt 10572586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 6612212 - 6612167
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||| ||||||||||||||||||| | |||||||||| |||||    
T  6612212 aaaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtc 6612167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 17705625 - 17705592
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcg 197  Q
    ||||| ||||||||||||||||||||||||||||    
T  17705625 aaaatcacataattcagtgtaattatatgtgtcg 17705592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 17754329 - 17754374
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||| |||||||||||||||| |||||||||| |||| |||||    
T  17754329 aaaaaattacataattcagtgtaactatatgtgtcagtgtggtgtc 17754374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 21378596 - 21378637
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttg 203  Q
    ||||||| ||||||||||||||||||| | ||||||||||||    
T  21378596 aaaaaattacataattcagtgtaattacaagtgtcggtgttg 21378637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 23636088 - 23636051
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  23636088 aaaattacataattcagtgtaattgtatgtgtcggtgt 23636051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 26837783 - 26837738
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||| |||||| |||||||||||||| ||| ||||||||||    
T  26837783 aaaaaataatataatttagtgtaattatatgagtcagtgttgtgtc 26837738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 35919317 - 35919272
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||| ||||||||||||||||||||| ||||| |||| |||||    
T  35919317 aaaaaatcacataattcagtgtaattataagtgtccgtgtcgtgtc 35919272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 36878481 - 36878518
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  36878481 aaaatcacataattcagtgtaattataggtgtcggtgt 36878518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 40181891 - 40181928
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  40181891 aaaatcacataattcagtgtaattatatgtatcggtgt 40181928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 47989515 - 47989560
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||| ||||||||||||||||||| | |||||||||| |||||    
T  47989515 aaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtc 47989560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 52903277 - 52903306
Alignment:
Q  172 ataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||||||||||||||||||||    
T  52903277 ataattcagtgtaattatatgtgtcggtgt 52903306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 13436479 - 13436515
Alignment:
Q  165 aaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||| |||||||||||||||||||||||||| |||||    
T  13436479 aaatcacataattcagtgtaattatatgtgttggtgt 13436515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 19058922 - 19058858
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||| ||||   | | |||| |||||||||||||||||||||| | ||||||||||    
T  19058922 acacgccgacacagctaataatttaaaaagataacataattcagtgtaattacaagtgtcggtgt 19058858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 22881682 - 22881618
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||||||||   | | ||||||| |||||||| |||||||||| | ||||||||||    
T  22881682 acacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgt 22881618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 24462716 - 24462676
Alignment:
Q  163 aaaaataacataattcagtgtaattatatgtgtcggtgttg 203  Q
    |||||| | |||||||||||||||||||| |||||||||||    
T  24462716 aaaaattatataattcagtgtaattatatctgtcggtgttg 24462676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 30173803 - 30173755
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtccgt 210  Q
    ||||||| |||||| |||||||||||| | |||||||||| ||||||||    
T  30173803 aaaaaattacataactcagtgtaattacaagtgtcggtgtcgtgtccgt 30173755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 40285686 - 40285638
Alignment:
Q  171 cataattcagtgtaattatatgtgtcggtgttgtgtccgtgcttcatag 219  Q
    |||||||||||||| | |||||||||| ||| ||||| |||||||||||    
T  40285686 cataattcagtgtagtcatatgtgtcgatgtcgtgtcggtgcttcatag 40285638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 43492580 - 43492496
Alignment:
Q  117 ggacacggacaccagacactacacgccgacacaacta--aatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||| |||||| ||||| |||||||||||| ||||  ||||||  | ||||| || |||||| |||||||||| |||||||||||    
T  43492580 ggacacagacaccggacacgacacgccgacaccactagtaatttg--agaaaatcacgtaattcggtgtaattatgtgtgtcggtgt 43492496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 48148078 - 48148034
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||||| | |||||||||||||||||||| ||||||||| ||||    
T  48148078 aaaaaatcatataattcagtgtaattatatatgtcggtgtcgtgt 48148034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 18367823 - 18367899
Alignment:
Q  131 gacactacacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||| ||||||||||||| |||| ||| ||| ||||| ||| ||| |||||||||||||||||||||||| |||||    
T  18367823 gacacgacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtgtc 18367899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 5626781 - 5626698
Alignment:
Q  117 ggacacggacaccagacact-acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||  |||||| |||||||||||||||||| ||| ||| ||||| || || |||||||||| |||||||||||||||    
T  5626781 ggacacggacac--gacactgacacgccgacacaactaatttttttagaaaatcacttagttcagtgtaaatatatgtgtcggtgt 5626698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 16488656 - 16488586
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||||||| |||| ||| ||| ||||| ||| ||| |||||||||||||||||||||||| |||||    
T  16488656 acacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtgtc 16488586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 9025533 - 9025488
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtccg 209  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||    
T  9025533 aaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtccg 9025488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 7027260 - 7027299
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  7027260 aaaaaatcacataattcagtgtaattatatgtgtcggtgt 7027299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 8931668 - 8931598
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||||||| |||||  | | | |||||||||||||||||| ||||||||||||||| ||| |||||    
T  8931668 acacgccgacacagctaaaaatttgagaaaataacataattcagtataattatatgtgtcgatgtcgtgtc 8931598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 7265632 - 7265595
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  7265632 aaaatcacataattcagtgtaattatatgtgtcggtgt 7265595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 9522909 - 9522954
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||    
T  9522909 aaaaaatcacataattcagtgtaattacaagtgtcggtgttgtgtc 9522954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 34595127 - 34595191
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||||||||   | | ||||||| ||||||||||||||||||| | ||||||||||    
T  34595127 acacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgt 34595191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 7086815 - 7086858
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||| |||||||| ||||||||||||||||||||||| |||||    
T  7086815 aaaatcacataatttagtgtaattatatgtgtcggtgtagtgtc 7086858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 9027204 - 9027243
Alignment:
Q  170 acataattcagtgtaattatatgtgtcggtgttgtgtccg 209  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  9027204 acataattccgtgtaattatatgtgtcggtgtcgtgtccg 9027243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 26562709 - 26562752
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||    
T  26562709 aaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtc 26562752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 9195793 - 9195751
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||| |||||||| ||||||||||||||||||||||| ||||    
T  9195793 aaaatgacataatttagtgtaattatatgtgtcggtgtcgtgt 9195751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 9658899 - 9658937
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgtt 202  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  9658899 aaaatcacataattcagtgtaattatatttgtcggtgtt 9658937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 10770740 - 10770670
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||| ||||||||||   | | ||||||| ||||||||||||||||||| | |||||||||| |||||    
T  10770740 acacgccaacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtc 10770670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 16766690 - 16766760
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||||||| ||||   | | ||||||| ||||||||||||||||||| | |||||||||| |||||    
T  16766690 acacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtc 16766760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 16833292 - 16833366
Alignment:
Q  129 cagacact-acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgtt 202  Q
    |||||||| ||||||||||||||||||   | | ||||||| ||||| ||||||||||||| | |||||||||||    
T  16833292 cagacactgacacgccgacacaactaataatttgaaaaaatcacatacttcagtgtaattacaagtgtcggtgtt 16833366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 7377999 - 7378036
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  7377999 aaaatcacataattcaatgtaattatatgtgtcggtgt 7378036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 7801243 - 7801158
Alignment:
Q  117 ggacacggacaccagacacta-cacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||| |||  |||||| |||||||||||||||||   | | ||||||| ||||||||||| ||||||| | ||||||||||    
T  7801243 ggacacggataccgaacactaacacgccgacacaactaataatttgaaaaaatcacataattcagcgtaattacaagtgtcggtgt 7801158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 9617454 - 9617491
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  9617454 aaaatcacataattcaatgtaattatatgtgtcggtgt 9617491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 9629403 - 9629440
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  9629403 aaaatcacataattcaatgtaattatatgtgtcggtgt 9629440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 11591909 - 11591876
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcg 197  Q
    ||||| ||||||||||||||||||||||||||||    
T  11591909 aaaatcacataattcagtgtaattatatgtgtcg 11591876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 13360411 - 13360374
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  13360411 aaaatcacataattcagtgtaattatatgtttcggtgt 13360374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 13851756 - 13851789
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcg 197  Q
    |||||||| |||||||||||||||||||||||||    
T  13851756 aaaataacgtaattcagtgtaattatatgtgtcg 13851789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 19040372 - 19040409
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  19040372 aaaatcacataattcagtgtaattatatgtgtctgtgt 19040409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 21924966 - 21924937
Alignment:
Q  172 ataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||||||||||||||||||||    
T  21924966 ataattcagtgtaattatatgtgtcggtgt 21924937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 7973672 - 7973716
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||||| |||||||| |||||||||||| |||||||||| ||||    
T  7973672 aaaaaattacataattaagtgtaattataagtgtcggtgtcgtgt 7973716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 7977896 - 7977832
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||| ||||   | | ||||||| ||||||||||||||||||| | ||||||||||    
T  7977896 acacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtgt 7977832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 17327719 - 17327651
Alignment:
Q  139 acgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||||||||||  || | | ||||| |||||||| ||||||| |||||||||| |||| |||||    
T  17327719 acgccgacacaactaagattttgagaaaatcacataatttagtgtaactatatgtgtcagtgtcgtgtc 17327651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 34073379 - 34073343
Alignment:
Q  171 cataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    |||||||||||||||||||||| |||||||| |||||    
T  34073379 cataattcagtgtaattatatgggtcggtgtcgtgtc 34073343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 34910294 - 34910374
Alignment:
Q  121 acggacaccagacactacacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||||| ||||||||||||||||||   | | ||||||| ||||||||||||||||||| | | ||||||||    
T  34910294 acggacaccagacacgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagagtcggtgt 34910374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 35222931 - 35222995
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||||||||  || ||| ||||| |||||||||| |||||||||||||||||||||    
T  35222931 acacgccgacacaactaacatttttagaaaatcacataattcaatgtaattatatgtgtcggtgt 35222995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 14209098 - 14209176
Alignment:
Q  129 cagacactacacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||| ||||||||||||||||||   | ||||||||| ||||||||||||||||||| | ||||| |||| |||||    
T  14209098 cagacacgacacgccgacacaactaataattttaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtc 14209176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 13414441 - 13414526
Alignment:
Q  120 cacggacaccagacactacacg----ccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||||||||||| |||||    |||||||||| |||| | ||| ||||| | |||||||| |||||||||||||||||||||    
T  13414441 cacggacaccagacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcaatgtaattatatgtgtcggtgt 13414526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 7928468 - 7928507
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  7928468 aaaaaatcacataattcagtgtaattatatgtgtcggtgt 7928507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 14027976 - 14028064
Alignment:
Q  117 ggacacggacaccagacactacacg----ccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||| ||||| |||||    |||||||| |||| ||| ||| ||||| ||| ||| ||||||||||||||||||||||||    
T  14027976 ggacacggacaccggacacgacacggacaccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgt 14028064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 40993376 - 40993337
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  40993376 aaaaaatcacataattcagtgtaattatatgtgtcggtgt 40993337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 30184147 - 30184105
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgt 204  Q
    ||||||| ||||||||||||||||||| |||||||||||||||    
T  30184147 aaaaaatgacataattcagtgtaattacatgtgtcggtgttgt 30184105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 16000091 - 16000018
Alignment:
Q  129 cagacact-acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||| ||||||||||||||||||   | | |||||||||||||||||||||||| || | ||||||||||    
T  16000091 cagacactgacacgccgacacaactaataatttaaaaaaataacataattcagtgtaactacaagtgtcggtgt 16000018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 38731234 - 38731275
Alignment:
Q  160 ttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  38731234 ttaaaaaatcacataattcagtgtagttatatgtgtcggtgt 38731275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 3962832 - 3962793
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttg 203  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  3962832 aaaataacataactcagtgttattatatgtgtcggtgttg 3962793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 8039866 - 8039831
Alignment:
Q  172 ataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    |||||||||||||||||||||||||||||| |||||    
T  8039866 ataattcagtgtaattatatgtgtcggtgtcgtgtc 8039831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 13845586 - 13845527
Alignment:
Q  142 ccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||  ||||||| ||| ||||| ||| ||| ||||||||||||||||||||||||    
T  13845586 ccgacacagttaaattttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgt 13845527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 195
Target Start/End: Complemental strand, 16192789 - 16192758
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgt 195  Q
    ||||||||||||||||||||||||||||||||    
T  16192789 aaaataacataattcagtgtaattatatgtgt 16192758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 17005650 - 17005616
Alignment:
Q  172 ataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||||||||||||||||| |||||||||||||||    
T  17005650 ataattcagtgtaattataagtgtcggtgttgtgt 17005616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 20503458 - 20503524
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttg 203  Q
    ||||||||||||||| ||   | | ||||||| ||||||||||||||||||| | ||||||||||||    
T  20503458 acacgccgacacaacaaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgttg 20503524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 8789589 - 8789552
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  8789589 aaaatcacataattccgtgtaattatatgtgtcggtgt 8789552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 20691339 - 20691376
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  20691339 aaaatgacataattcagtgtaatcatatgtgtcggtgt 20691376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 25093522 - 25093559
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  25093522 aaaatcacacaattcagtgtaattatatgtgtcggtgt 25093559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 25948928 - 25948883
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||| ||||||||||||||||||||| |||| ||||| |||||    
T  25948928 aaaaaatcacataattcagtgtaattataagtgttggtgtcgtgtc 25948883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 29508462 - 29508503
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttg 203  Q
    ||||||| | |||||||||||||||||||||||||| |||||    
T  29508462 aaaaaatcatataattcagtgtaattatatgtgtcgatgttg 29508503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 10690301 - 10690261
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgt 204  Q
    ||||| |||||||||||||||||||||| ||||||| ||||    
T  10690301 aaaatcacataattcagtgtaattatatttgtcggtattgt 10690261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 10954945 - 10955009
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||||||||   | | ||||||| ||||||||||||||||| | | ||||||||||    
T  10954945 acacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatcacaagtgtcggtgt 10955009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 15314917 - 15314873
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  15314917 aaaaaatcacataatttagtgtaattatatgtgttggtgtcgtgt 15314873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 18426942 - 18427006
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||||||| |||||   | | ||||||| ||||||||| |||||||||||| |||||||||    
T  18426942 acacgccgacaccactaataatttcaaaaaatcacataattcggtgtaattatatatgtcggtgt 18427006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 24633441 - 24633401
Alignment:
Q  163 aaaaataacataattcagtgtaattatatgtgtcggtgttg 203  Q
    |||||| || ||||||| |||||||||||||||||||||||    
T  24633441 aaaaatcacgtaattcaatgtaattatatgtgtcggtgttg 24633401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 1656674 - 1656721
Alignment:
Q  142 ccgacacaactaaatttgttaaaaaataacataattcagtgtaattat 189  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  1656674 ccgacacaactaaattttttaaaaaatcacataattcagtgtaattat 1656721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 5835267 - 5835304
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5835267 aaaataacataattcagtgtaattatatgtgtcggtgt 5835304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 7328730 - 7328687
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  7328730 aaaataacataatttagtgtaattatatgtgtcggtgtcgtgtc 7328687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 15902842 - 15902885
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||| |||||||| |||||||||||||||||||||||||||||    
T  15902842 aaaatcacataatttagtgtaattatatgtgtcggtgttgtgtc 15902885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 17307913 - 17307956
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    |||||||||||||||||||||||||||||||| ||||| |||||    
T  17307913 aaaataacataattcagtgtaattatatgtgttggtgtcgtgtc 17307956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 18213098 - 18213035
Alignment:
Q  139 acgccgacacaactaaatttgttaa-aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||||||||||| ||| || | ||||| |||||||| |||||||||||||||||||||||    
T  18213098 acgccgacacaactaattttttttagaaaatcacataatttagtgtaattatatgtgtcggtgt 18213035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 22602749 - 22602706
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||| |||||||||||||||||||||||||||||||| |||||    
T  22602749 aaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtc 22602706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 39138451 - 39138501
Alignment:
Q  151 ctaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||| ||| ||||| |||||||||||||||||||||| |||||||||    
T  39138451 ctaaattttttagaaaatcacataattcagtgtaattatatatgtcggtgt 39138501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 640129 - 640170
Alignment:
Q  160 ttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
T  640129 ttaacaaatcacataattcagtgtaattatatgtgtcggtgt 640170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 18013115 - 18013070
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||| ||||||||||||||||||||||||||| |||| |||||    
T  18013115 aaaaaattacataattcagtgtaattatatgtgtcagtgtcgtgtc 18013070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 18039017 - 18039074
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtccgtgcttcatag 219  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||| ||| |||||||    
T  18039017 aaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtttcatag 18039074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 9408420 - 9408336
Alignment:
Q  118 gacacggacaccagacact-acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||||||||| |||| ||||||||| |||   | | ||||||| |||||||| |||||||||| | ||||||||||    
T  9408420 gacacggacaccagacactgacacaccgacacaattaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgt 9408336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 27732278 - 27732243
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggt 199  Q
    ||||| ||||||||||||||||||||||||||||||    
T  27732278 aaaattacataattcagtgtaattatatgtgtcggt 27732243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 17851451 - 17851489
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgtt 202  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  17851451 aaaatcacataattcagtgtaattatatgtgtctgtgtt 17851489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 23128692 - 23128658
Alignment:
Q  172 ataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||||||||||||| |||||||||||||||||||    
T  23128692 ataattcagtgtaatcatatgtgtcggtgttgtgt 23128658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 24339635 - 24339705
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||||||| ||||   | | ||||||| ||||||||||||||||||| | |||||||||| |||||    
T  24339635 acacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtc 24339705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 5233649 - 5233694
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtccg 209  Q
    ||||| |||||||  ||||||||||||||||| |||||||||||||    
T  5233649 aaaatcacataatctagtgtaattatatgtgttggtgttgtgtccg 5233694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 9482954 - 9482991
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  9482954 aaaatcacacaattcagtgtaattatatgtgtcggtgt 9482991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 12278855 - 12278888
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcg 197  Q
    ||||| ||||||||||||||||||||||||||||    
T  12278855 aaaatgacataattcagtgtaattatatgtgtcg 12278888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 20549811 - 20549848
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| || |||||||||||||||||||||||||||||    
T  20549811 aaaatcacgtaattcagtgtaattatatgtgtcggtgt 20549848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 3142109 - 3142069
Alignment:
Q  172 ataattcagtgtaattatatgtgtcggtgttgtgtccgtgc 212  Q
    |||||||| |||||| |||||||||||||||||||| ||||    
T  3142109 ataattcaatgtaatcatatgtgtcggtgttgtgtcggtgc 3142069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 9949112 - 9949073
Alignment:
Q  161 taaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  9949112 taaaaaataaaa-aattcagtgtaattatatgtgtcggtgt 9949073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 22868062 - 22868094
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtc 196  Q
    ||||| |||||||||||||||||||||||||||    
T  22868062 aaaatcacataattcagtgtaattatatgtgtc 22868094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 23849491 - 23849451
Alignment:
Q  170 acataattcagtgtaattatatgtgtcggtgt-tgtgtccg 209  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  23849491 acataattcagtataattatatgtgtcggtgtatgtgtccg 23849451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 41020515 - 41020555
Alignment:
Q  163 aaaaataacataattcagtgtaattatatgtgtcggtgttg 203  Q
    |||||| |||||||| |||||||||||||| ||||||||||    
T  41020515 aaaaatcacataatttagtgtaattatatgcgtcggtgttg 41020555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 46160916 - 46160964
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtccgtgc 212  Q
    |||||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  46160916 aaaataacataattcagtgttattatatgtgtcggtgtcgtgtcggtgc 46160964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 5414238 - 5414168
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||||||| |||| ||| ||| ||||| ||| ||| |||||||||||||||| ||||||| |||||    
T  5414238 acacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtatcggtgtcgtgtc 5414168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 22234931 - 22234886
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||| |||||||||||||||||| ||||||||||||| |||||    
T  22234931 aaaaaatcacataattcagtgtaattctatgtgtcggtgtcgtgtc 22234886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 32273636 - 32273539
Alignment:
Q  93 actatgaagcacgagtactcacatggacacggacaccagacactacacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattata 190  Q
    |||||||||||||| |||  | |||||||| |||||| ||||  ||||||| ||||||||||   | | |||||||||||||||||||  ||||||||    
T  32273636 actatgaagcacgaatacggatatggacacagacaccggacatgacacgccaacacaactaataatttgaaaaaataacataattcagaataattata 32273539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 40179677 - 40179638
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  40179677 aaaaaatcacataattcagtgtaattatatgcgtcggtgt 40179638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 54580064 - 54580025
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  54580064 aaaaaatcacataattcagtgtaattataagtgtcggtgt 54580025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 1213264 - 1213222
Alignment:
Q  160 ttaaaaaataacataattcagtgtaattatatgtgtcggtgtt 202  Q
    ||||||||| | |||||||||||||||||||||||||| ||||    
T  1213264 ttaaaaaattatataattcagtgtaattatatgtgtcgatgtt 1213222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 40613470 - 40613504
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcgg 198  Q
    ||||| |||||||||||||||||||||||||||||    
T  40613470 aaaatcacataattcagtgtaattatatgtgtcgg 40613504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 5555175 - 5555134
Alignment:
Q  160 ttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||| |||||| | |||||||||||||||||||||    
T  5555175 ttaaaaaataagataatttaatgtaattatatgtgtcggtgt 5555134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 5775397 - 5775360
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  5775397 aaaatcacataattaagtgtaattatatgtgtcggtgt 5775360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 24543950 - 24543991
Alignment:
Q  114 catggacacggacaccagacact-acacgccgacacaactaa 154  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  24543950 catggatacggacaccagacactgacacgccgacacaactaa 24543991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 29205462 - 29205503
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttg 203  Q
    ||||||| ||||||||||||||||||| | ||||||||||||    
T  29205462 aaaaaatcacataattcagtgtaattacaagtgtcggtgttg 29205503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 12708130 - 12708210
Alignment:
Q  129 cagacact-acacgccgacacaactaa-atttgttaaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    |||||||| |||||| ||||||||||| | || ||||||||| | ||||||||||||||||| | |||||| ||| |||||    
T  12708130 cagacactgacacgcagacacaactaataatttttaaaaaatgaaataattcagtgtaattacaagtgtcgatgtcgtgtc 12708210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 16189729 - 16189765
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtg 200  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  16189729 aaaatcacataattcagtgtaattatgtgtgtcggtg 16189765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 70296 - 70335
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  70296 aaaaaataacataattcagtgtaattataagtgtcggtgt 70335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 23438 - 23483
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||||    
T  23438 aaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtc 23483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 135351 - 135306
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtccg 209  Q
    ||||| ||||||||| |||||||||||||||||||||| |||||||    
T  135351 aaaatcacataattctgtgtaattatatgtgtcggtgtcgtgtccg 135306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 6062 - 5998
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||| ||| |||| ||| ||| ||||| ||| ||| ||||||||||||||||||||||||    
T  6062 acacgccgatacatctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgt 5998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 9891 - 9955
Alignment:
Q  137 acacgccgacacaactaaatttgttaaaaaataacataattcagtgtaattatatgtgtcggtgt 201  Q
    ||||||||||||| |||| ||| ||| ||||| | | ||| ||||||||||||||||||||||||    
T  9891 acacgccgacacagctaatttttttagaaaatcataaaatgcagtgtaattatatgtgtcggtgt 9955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 28877 - 28913
Alignment:
Q  171 cataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||||| |||||||||||||||||||||||||||    
T  28877 cataattcaatgtaattatatgtgtcggtgttgtgtc 28913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 44564 - 44529
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggt 199  Q
    ||||| ||||||||||||||||||||||||||||||    
T  44564 aaaatcacataattcagtgtaattatatgtgtcggt 44529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 99913 - 99956
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||    
T  99913 aaaataacataattcaatgtaattatatgtgttggtgtcgtgtc 99956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 9786 - 9744
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||| || ||||||||||||||||||||||||||||| ||||    
T  9786 aaaatcacttaattcagtgtaattatatgtgtcggtgtcgtgt 9744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 1053 - 1098
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgtc 207  Q
    ||||||| |||||||||||||||| |||||||||| |||| |||||    
T  1053 aaaaaattacataattcagtgtaactatatgtgtcagtgtggtgtc 1098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 101011 - 101052
Alignment:
Q  155 atttgttaaaaaataacataattcagtgtaattatatgtgtc 196  Q
    |||| ||||||||| |||||||||| ||||||||||||||||    
T  101011 attttttaaaaaatgacataattcaatgtaattatatgtgtc 101052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 53200 - 53236
Alignment:
Q  164 aaaataacataattcagtgtaattatatgtgtcggtg 200  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  53200 aaaatcacataattcagtgtaattataagtgtcggtg 53236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 23788 - 23832
Alignment:
Q  162 aaaaaataacataattcagtgtaattatatgtgtcggtgttgtgt 206  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||||    
T  23788 aaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 23832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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