View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18278_high_26 (Length: 365)

Name: NF18278_high_26
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18278_high_26
NF18278_high_26
[»] chr4 (9 HSPs)
chr4 (5-346)||(9275488-9275829)
chr4 (4-319)||(9208327-9208643)
chr4 (5-319)||(9204108-9204423)
chr4 (4-319)||(9243936-9244249)
chr4 (10-130)||(9286046-9286166)
chr4 (113-179)||(7580761-7580827)
chr4 (215-314)||(50066056-50066156)
chr4 (262-312)||(34495226-34495277)
chr4 (215-314)||(25514899-25514999)
[»] scaffold0135 (7 HSPs)
scaffold0135 (5-319)||(2191-2506)
scaffold0135 (5-319)||(6406-6721)
scaffold0135 (5-319)||(10621-10936)
scaffold0135 (5-319)||(14836-15151)
scaffold0135 (5-319)||(19051-19366)
scaffold0135 (5-319)||(23266-23581)
scaffold0135 (5-319)||(27481-27796)
[»] scaffold0959 (1 HSPs)
scaffold0959 (5-319)||(2753-3076)
[»] scaffold0753 (2 HSPs)
scaffold0753 (5-320)||(681-1006)
scaffold0753 (4-319)||(2774-3087)
[»] scaffold0091 (1 HSPs)
scaffold0091 (128-314)||(15787-15982)
[»] chr8 (3 HSPs)
chr8 (128-314)||(9418130-9418324)
chr8 (179-314)||(24097410-24097546)
chr8 (202-314)||(31576630-31576743)
[»] chr6 (1 HSPs)
chr6 (129-313)||(14097598-14097791)
[»] chr5 (5 HSPs)
chr5 (128-314)||(26649330-26649526)
chr5 (128-314)||(26920915-26921111)
chr5 (215-314)||(2641211-2641311)
chr5 (128-178)||(26649628-26649678)
chr5 (128-178)||(26921213-26921263)
[»] chr3 (2 HSPs)
chr3 (128-314)||(36433921-36434116)
chr3 (128-314)||(9308358-9308553)
[»] chr1 (4 HSPs)
chr1 (215-314)||(26907818-26907918)
chr1 (215-314)||(23550364-23550464)
chr1 (179-294)||(5382775-5382891)
chr1 (219-314)||(35756002-35756098)
[»] chr2 (2 HSPs)
chr2 (227-312)||(14271979-14272065)
chr2 (183-314)||(29910345-29910477)
[»] chr7 (3 HSPs)
chr7 (215-314)||(4314390-4314490)
chr7 (113-179)||(8980575-8980641)
chr7 (183-280)||(48712810-48712907)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 5 - 346
Target Start/End: Complemental strand, 9275829 - 9275488
Alignment:
Q  5 tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9275829 tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct 9275730  T
Q  105 gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9275729 gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct 9275630  T
Q  205 tgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaattcattaatgaataactttat 304  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9275629 tgaatcgtcctaagtattttactatagaatctccatgcatataatattgaagtttcatctttgataattctccaatcaattcattaatgaataactttat 9275530  T
Q  305 gaataattcaatatttcattgaagtgctttggatctctagaa 346  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9275529 gaataattcaatatttcattgaagtgctttggatctctagaa 9275488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 4 - 319
Target Start/End: Complemental strand, 9208643 - 9208327
Alignment:
Q  4 ctgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattc 103  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| | ||||||||||||    
T  9208643 ctgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagattatcgtctccgcaaggattattc 9208544  T
Q  104 tgtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactc 203  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9208543 tgtgacgagaatgttctattagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactc 9208444  T
Q  204 ttgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataacttt 302  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9208443 ttgaatcgtcctaagtattttactatagaatctccatgcatataatattgaagtttcatctttgataattctccaatcaatatcattaatgaataacttt 9208344  T
Q  303 atgaataattcaatatt 319  Q
    |||||||||||||||||    
T  9208343 atgaataattcaatatt 9208327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 9204423 - 9204108
Alignment:
Q  5 tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct 104  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||| ||||||| | |||||||||||||    
T  9204423 tgtttaaacaaaattttgaaagatgatgataaatctggtaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct 9204324  T
Q  105 gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct 204  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9204323 gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct 9204224  T
Q  205 tgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataacttta 303  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9204223 tgaatcgtcctaagtattttactatagaatctccatgcatataatattgaagtttcatctttgataattctccaatcaatatcattaatgaataacttta 9204124  T
Q  304 tgaataattcaatatt 319  Q
    ||||||||||||||||    
T  9204123 tgaataattcaatatt 9204108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 4 - 319
Target Start/End: Complemental strand, 9244249 - 9243936
Alignment:
Q  4 ctgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaat-tgcttaagtaatttagtattaagattatcgtcttcacaaggattatt 102  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||||||||||  || |||||||||||| ||||||||||||||||||  ||| |||| ||    
T  9244249 ctgttcaaacaaaattttgaaagatgatgataaatttggaaagtgcaccaaactgattaagtaatttattattaagattatcgtctttgcaatgattgtt 9244150  T
Q  103 ctgtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattctt---------atcttgaatagtga 193  Q
     | ||||||||||||||||| |||         |||||||||||||||| ||||||||||| |||||||||||||||         || ||||||||       
T  9244149 gtatgacgagaatgttctatgaga---------aacctttctcaatgtcaaaattgctttgtttgatttctattcttccaaatcatattttgaatag--- 9244062  T
Q  194 tgggaaactcttgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaat 292  Q
     || ||  | ||| ||| |||||||||||||| ||||||||||||| |||||| ||  |||| ||||||||||||||||||| |||||||| ||||||||    
T  9244061 -ggcaattttttggatcatcctaagtattttatgatagaatctccatgcatatgatcatgaattttcatctttgataattcttcaatcaatatcattaat 9243963  T
Q  293 gaataactttatgaataattcaatatt 319  Q
    ||||||||  |||||||||||||||||    
T  9243962 gaataactcaatgaataattcaatatt 9243936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 9286166 - 9286046
Alignment:
Q  10 aaacaaaattttgaaagatgatgataaatctggcaagtgcac-caattgcttaagtaatttagtattaagattatcgtcttcacaaggattattctgtga 108  Q
    ||||||||||||||||||||||||||||| |||||| |||||  || || |||||||||||| || |||||||||||| | |||||||||| || | |||    
T  9286166 aaacaaaattttgaaagatgatgataaatttggcaaatgcacgaaaatgtttaagtaatttaatagtaagattatcgtgtacacaaggattgttgtatga 9286067  T
Q  109 cgagaatgttctattagagaca 130  Q
     || || |||||||||||||||    
T  9286066 tgataa-gttctattagagaca 9286046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 7580827 - 7580761
Alignment:
Q  113 aatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattctt 179  Q
    ||||||||||||| ||||||| ||||||||||||| ||| ||||||||||| |||||||||||||||    
T  7580827 aatgttctattagggacatgagaaacctttctcaaagtcaaaattgctttgtttgatttctattctt 7580761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 314
Target Start/End: Original strand, 50066056 - 50066156
Alignment:
Q  215 taagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataactttatgaataattc 313  Q
    ||||||||||| ||||||||||| | |||||||||  |||| |||| |||||||| ||||||| |||||| |||| ||||||| |||| || ||||||||    
T  50066056 taagtattttatgatagaatctcaaagcatataatcatgaattttcttctttgatcattctccgatcaatatcataaatgaatgacttaataaataattc 50066155  T
Q  314 a 314  Q
    |    
T  50066156 a 50066156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 34495226 - 34495277
Alignment:
Q  262 tctttgataattctccaatcaat-tcattaatgaataactttatgaataatt 312  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||||||||||    
T  34495226 tctttgataattctccaatcaatatcattaatgaatgacttaatgaataatt 34495277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 314
Target Start/End: Complemental strand, 25514999 - 25514899
Alignment:
Q  215 taagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataactttatgaataattc 313  Q
    ||||||| ||| ||||||||||| | |||||| ||  |||| |||| |||||||| ||||||| |||||| |||| ||||||| |||| || ||||||||    
T  25514999 taagtatattatgatagaatctcaaagcatatgatcatgaattttcttctttgatcattctccgatcaatatcataaatgaatgacttaataaataattc 25514900  T
Q  314 a 314  Q
    |    
T  25514899 a 25514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 2506 - 2191
Alignment:
Q  5 tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| | |||||||||||||    
T  2506 tgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct 2407  T
Q  105 gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct 204  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2406 gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct 2307  T
Q  205 tgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataacttta 303  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2306 tgaatcgtcctaagtattttactatagaatctccatgcatataatattgaagtttcatctttgataattctccaatcaatatcattaatgaataacttta 2207  T
Q  304 tgaataattcaatatt 319  Q
    ||||||||||||||||    
T  2206 tgaataattcaatatt 2191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 6721 - 6406
Alignment:
Q  5 tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| | |||||||||||||    
T  6721 tgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct 6622  T
Q  105 gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct 204  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6621 gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct 6522  T
Q  205 tgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataacttta 303  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6521 tgaatcgtcctaagtattttactatagaatctccatgcatataatattgaagtttcatctttgataattctccaatcaatatcattaatgaataacttta 6422  T
Q  304 tgaataattcaatatt 319  Q
    ||||||||||||||||    
T  6421 tgaataattcaatatt 6406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 10936 - 10621
Alignment:
Q  5 tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| | |||||||||||||    
T  10936 tgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct 10837  T
Q  105 gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct 204  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10836 gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct 10737  T
Q  205 tgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataacttta 303  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10736 tgaatcgtcctaagtattttactatagaatctccatgcatataatattgaagtttcatctttgataattctccaatcaatatcattaatgaataacttta 10637  T
Q  304 tgaataattcaatatt 319  Q
    ||||||||||||||||    
T  10636 tgaataattcaatatt 10621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #4
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 15151 - 14836
Alignment:
Q  5 tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| | |||||||||||||    
T  15151 tgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct 15052  T
Q  105 gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct 204  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15051 gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct 14952  T
Q  205 tgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataacttta 303  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14951 tgaatcgtcctaagtattttactatagaatctccatgcatataatattgaagtttcatctttgataattctccaatcaatatcattaatgaataacttta 14852  T
Q  304 tgaataattcaatatt 319  Q
    ||||||||||||||||    
T  14851 tgaataattcaatatt 14836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #5
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 19366 - 19051
Alignment:
Q  5 tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| | |||||||||||||    
T  19366 tgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct 19267  T
Q  105 gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct 204  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19266 gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct 19167  T
Q  205 tgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataacttta 303  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19166 tgaatcgtcctaagtattttactatagaatctccatgcatataatattgaagtttcatctttgataattctccaatcaatatcattaatgaataacttta 19067  T
Q  304 tgaataattcaatatt 319  Q
    ||||||||||||||||    
T  19066 tgaataattcaatatt 19051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #6
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 23581 - 23266
Alignment:
Q  5 tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| | |||||||||||||    
T  23581 tgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct 23482  T
Q  105 gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct 204  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23481 gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct 23382  T
Q  205 tgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataacttta 303  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23381 tgaatcgtcctaagtattttactatagaatctccatgcatataatattgaagtttcatctttgataattctccaatcaatatcattaatgaataacttta 23282  T
Q  304 tgaataattcaatatt 319  Q
    ||||||||||||||||    
T  23281 tgaataattcaatatt 23266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #7
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 27796 - 27481
Alignment:
Q  5 tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| | |||||||||||||    
T  27796 tgtttaaacaaaattttgaaagatgatgataaatctggcaaatgcaccaactgcttaagtaatttagtagtaagataatcgtctccgcaaggattattct 27697  T
Q  105 gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattcttatcttgaatagtgatgggaaactct 204  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27696 gtgacgagaatgttctataagagacatgaaaaacttttctcaatgtcgaaattgctttgctttatttctattcttatcttgaatagtgatgggaaactct 27597  T
Q  205 tgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataacttta 303  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27596 tgaatcgtcctaagtattttactatagaatctccatgcatataatattgaagtttcatctttgataattctccaatcaatatcattaatgaataacttta 27497  T
Q  304 tgaataattcaatatt 319  Q
    ||||||||||||||||    
T  27496 tgaataattcaatatt 27481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 3076 - 2753
Alignment:
Q  5 tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct 104  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| |||||||||||||| | ||||||||||| |    
T  3076 tgtttaaacaaaattttgaaagatgatgatagatctggcaagtgtaccaactgcttaagtaatttagtagtaagattatcgtctcctcaaggattattat 2977  T
Q  105 gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct---------tatcttgaatagtgatg 195  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||         |||||||||||||||||    
T  2976 gtgacgagaatgttctattagagacatgaaaaacctttttcaatgtcgaaattggtttgtttgatttgtattcttccaaatcatatcttgaatagtgatg 2877  T
Q  196 ggaaactcttgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatga 294  Q
    | ||||||||| ||| ||||||||||||| |||||||||||||| |||||| |||  ||||||||||||||||||||||| |||| ||| ||||||||||    
T  2876 gaaaactcttggatcatcctaagtatttttcgatagaatctccatgcatatgataaggaagtttcatctttgataattcttcaataaatgtcattaatga 2777  T
Q  295 ataactttatgaataattcaatatt 319  Q
    || ||||||||||||||||||||||    
T  2776 at-actttatgaataattcaatatt 2753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 5 - 320
Target Start/End: Original strand, 681 - 1006
Alignment:
Q  5 tgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcaccaattgcttaagtaatttagtattaagattatcgtcttcacaaggattattct 104  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||| |    
T  681 tgtttaaacaaaattttgaaacatgatgacaaatctggcaagtgcaccaactgcttaagtaatttagtatcaagattatcgtctccacaaggattatttt 780  T
Q  105 gtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct---------tatcttgaatagtgatg 195  Q
    ||||||||||||||||||||||||||||||||||||| |||||| || |||||||| || ||||||| ||||||         ||| |||||| ||||||    
T  781 gtgacgagaatgttctattagagacatgaaaaaccttcctcaatctcaaaattgctctgtttgatttttattcttccaaatcatatattgaatggtgatg 880  T
Q  196 ggaaactcttgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatga 294  Q
      ||||||||| ||| ||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||| ||| | ||||||||    
T  881 taaaactcttggatcatcctaagtattttacgatagaatatccatgcatatgataatgaagtttcatctttgataattctccaattaatattattaatga 980  T
Q  295 ataactttatgaataattcaatattt 320  Q
    |||||||||||||||||| |||||||    
T  981 ataactttatgaataatttaatattt 1006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 319
Target Start/End: Original strand, 2774 - 3087
Alignment:
Q  4 ctgtttaaacaaaattttgaaagatgatgataaatctggcaagtgcacc-aattgcttaagtaatttagtattaagattatcgtcttcacaaggattatt 102  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||||||| || || |||| ||||||||||||||||||||||||||  ||| |||| ||    
T  2774 ctgttgaaacaaaattttgaaagatgatgataaatttggaaagtgcaccgaactgattaaataatttagtattaagattatcgtctttgcaatgattgtt 2873  T
Q  103 ctgtgacgagaatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattctt---------atcttgaatagtga 193  Q
     | ||||||||||||||||| |||         |||||||||||||||| |||||| |||| |||||||||||||||         || |||||||| ||    
T  2874 gtatgacgagaatgttctatgaga---------aacctttctcaatgtcaaaattgttttgtttgatttctattcttccaaatcatattttgaataggga 2964  T
Q  194 tgggaaactcttgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaat 292  Q
        ||  | ||| |||||||||||||||||| ||||||||||||| |||||| ||  |||| ||||||||||||||||| | |||||||| ||||||||    
T  2965 ----aattttttggatcgtcctaagtattttatgatagaatctccatgcatatgatcatgaattttcatctttgataattattcaatcaatatcattaat 3060  T
Q  293 gaataactttatgaataattcaatatt 319  Q
    ||||||||  |||||||||||||||||    
T  3061 gaataactcaatgaataattcaatatt 3087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 128 - 314
Target Start/End: Original strand, 15787 - 15982
Alignment:
Q  128 acatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct--------tatcttgaatagtgatgggaaactcttgaatcgtcctaagt 219  Q
    |||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||        |||||||||||||||||| | | ||||| | | || |||||    
T  15787 acatgagaaacctttctcaaagtcaaaattcctttgattgatttctattctccaaattatatcttgaatagtgatggaagattcttggaccatcataagt 15886  T
Q  220 attttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataactttatgaataattca 314  Q
     ||||| ||||||||||||| |||||| ||  || | |||| ||||||||| ||||||||||||| |||||||||||| || | || |||||||||    
T  15887 cttttatgatagaatctccaagcatatgatcatgtattttcttctttgatatttctccaatcaatatcattaatgaatgacataataaataattca 15982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 128 - 314
Target Start/End: Complemental strand, 9418324 - 9418130
Alignment:
Q  128 acatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct--------tatcttgaatagtgatgggaaactcttgaatcgtcctaagt 219  Q
    |||||| |||||||||| || ||| ||||| ||||| ||||||||||||||        |||||||||| ||||||| | | ||||| | | || ||| |    
T  9418324 acatgataaacctttcttaaagtcaaaattcctttgattgatttctattctccaaattatatcttgaat-gtgatggaagattcttggaccatcataaat 9418226  T
Q  220 attttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataactttatgaataattca 314  Q
    |||||| ||||||||||||| |||||| ||  |||| |||| ||||||||| ||||||||||||| |||||||||||  |||| || |||||||||    
T  9418225 attttatgatagaatctccaagcatatgatcatgaattttcttctttgatatttctccaatcaatatcattaatgaacgacttaataaataattca 9418130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 314
Target Start/End: Original strand, 24097410 - 24097546
Alignment:
Q  179 tatcttgaatagtgatgggaaactcttgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctcca 278  Q
    ||||||||||||||||||   | ||||| ||| | |||||| || || |||||||||| || |||||| ||  |||| |||| |||||||||||||||||    
T  24097410 tatcttgaatagtgatggatgattcttggatcatgctaagtcttgtatgatagaatcttcatgcatatgatcatgaattttcttctttgataattctcca 24097509  T
Q  279 atcaa-ttcattaatgaataactttatgaataattca 314  Q
    |||||  |||| ||||||| |||| ||||||||||||    
T  24097510 atcaacatcatgaatgaatgacttaatgaataattca 24097546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 314
Target Start/End: Original strand, 31576630 - 31576743
Alignment:
Q  202 tcttgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataact 300  Q
    |||| |||| |||||| | ||||| |||||||||| || |||| | ||  |||| |||| ||||||||| || |||||||||| |||||||||||| |||    
T  31576630 tcttcaatcatcctaaatcttttatgatagaatcttcaagcatgtgatcatgaattttcttctttgatatttttccaatcaatatcattaatgaatgact 31576729  T
Q  301 ttatgaataattca 314  Q
    | || |||||||||    
T  31576730 taataaataattca 31576743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 313
Target Start/End: Complemental strand, 14097791 - 14097598
Alignment:
Q  129 catgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct--------tatcttgaatagtgatgggaaactcttgaatcgtcctaagta 220  Q
    ||||| |||||||||  || ||| ||||| ||||| ||||||||||||||        |||||||||||||||||| | | ||||| | | || |||||     
T  14097791 catgagaaacctttcggaaagtcaaaatttctttgattgatttctattctccaaatcatatcttgaatagtgatggaagattcttggaccatcataagtc 14097692  T
Q  221 ttttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataactttatgaataattc 313  Q
    ||||| ||||||||||||| |||||| ||  |||| |||| ||||||||| |||||||| |||| |||||||||| | |||| || ||||||||    
T  14097691 ttttatgatagaatctccaagcatatgatcatgaattttcttctttgatatttctccaaccaatatcattaatgactgacttaataaataattc 14097598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 314
Target Start/End: Complemental strand, 26649526 - 26649330
Alignment:
Q  128 acatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct--------tatcttgaatagtgatgggaaactcttgaatcgtcctaagt 219  Q
    |||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||        |||||| ||||||||||| | | ||||| | | || |||||    
T  26649526 acatgagaaacctttctcaaagtcaaaattcctttgattgatttctattctccaaatcatatctttaatagtgatggaagattcttggaccatcataagt 26649427  T
Q  220 attttacgatagaatctccacgcatataatattgaagtttcatctttgata-attctccaatcaat-tcattaatgaataactttatgaataattca 314  Q
     ||||| |||||||||||||  ||||| ||  |||| |||| |||||||||  ||||||||||||| |||||||||||| |||| || | |||||||    
T  26649426 cttttatgatagaatctccaaacatatgatcatgaattttcttctttgatattttctccaatcaatatcattaatgaatgacttaataagtaattca 26649330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 314
Target Start/End: Complemental strand, 26921111 - 26920915
Alignment:
Q  128 acatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct--------tatcttgaatagtgatgggaaactcttgaatcgtcctaagt 219  Q
    |||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||        |||||| ||||||||||| | | ||||| | | || |||||    
T  26921111 acatgagaaacctttctcaaagtcaaaattcctttgattgatttctattctccaaatcatatctttaatagtgatggaagattcttggaccatcataagt 26921012  T
Q  220 attttacgatagaatctccacgcatataatattgaagtttcatctttgata-attctccaatcaat-tcattaatgaataactttatgaataattca 314  Q
     ||||| |||||||||||||  ||||| ||  |||| |||| |||||||||  ||||||||||||| |||||||||||| |||| || | |||||||    
T  26921011 cttttatgatagaatctccaaacatatgatcatgaattttcttctttgatattttctccaatcaatatcattaatgaatgacttaataagtaattca 26920915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 314
Target Start/End: Complemental strand, 2641311 - 2641211
Alignment:
Q  215 taagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataactttatgaataattc 313  Q
    ||||||||||| ||||||||||| | |||||| ||  |||| |||| |||||||| ||||||| |||||| |||| ||||||| | || || ||||||||    
T  2641311 taagtattttatgatagaatctcaaagcatatgatcgtgaattttcttctttgatcattctccgatcaatatcataaatgaatgatttaataaataattc 2641212  T
Q  314 a 314  Q
    |    
T  2641211 a 2641211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 26649678 - 26649628
Alignment:
Q  128 acatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct 178  Q
    |||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  26649678 acatgagaaacctttctcaaagtcaaaattcctttgattgatttctattct 26649628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 26921263 - 26921213
Alignment:
Q  128 acatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct 178  Q
    |||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  26921263 acatgagaaacctttctcaaagtcaaaattcctttgattgatttctattct 26921213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 314
Target Start/End: Original strand, 36433921 - 36434116
Alignment:
Q  128 acatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct--------tatcttgaatagtgatgggaaactcttgaatcgtcctaagt 219  Q
    |||||| ||||||||||||| ||| ||||| ||||| ||||||||| ||||        |||||||||||||||| |   | ||||| | | || |||||    
T  36433921 acatgagaaacctttctcaaagtcaaaattcctttgattgatttctgttctccaaatcatatcttgaatagtgatagaggattcttggaccatcataagt 36434020  T
Q  220 attttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaa-ttcattaatgaataactttatgaataattca 314  Q
    |||||||||||||||||| | |||||| ||  |||| |||| |||||||| ||||||| |||||  |||| ||||||| |||| || |||||||||    
T  36434021 attttacgatagaatctcaaagcatatgatcatgaattttcttctttgatcattctccgatcaacatcataaatgaatgacttaataaataattca 36434116  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 314
Target Start/End: Complemental strand, 9308553 - 9308358
Alignment:
Q  128 acatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattct--------tatcttgaatagtgatgggaaactcttgaatcgtcctaagt 219  Q
    |||||||||||||||||||| ||| ||||| ||||| ||||||||| ||||        ||| |||||||||||| |   | ||||| | | || |||||    
T  9308553 acatgaaaaacctttctcaaagtcaaaattcctttgattgatttctcttctccaaattatattttgaatagtgatagaggattcttggaccatcataagt 9308454  T
Q  220 attttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataactttatgaataattca 314  Q
    |||||| ||||||||||  | |||||| ||  |||| |||| |||||||| ||||||| |||||| |||| ||||||| |||| || |||||||||    
T  9308453 attttatgatagaatcttaaagcatatgatcatgaattttcttctttgatcattctccgatcaatatcataaatgaatgacttaataaataattca 9308358  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 314
Target Start/End: Original strand, 26907818 - 26907918
Alignment:
Q  215 taagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataactttatgaataattc 313  Q
    ||||| ||||| ||||||||||||| |||||| ||  |||| |||| ||| ||||| ||||||||||||| |||||||||||| |||| || ||||||||    
T  26907818 taagtcttttatgatagaatctccaagcatatgatcatgaattttcttctatgatatttctccaatcaatatcattaatgaatgacttaataaataattc 26907917  T
Q  314 a 314  Q
    |    
T  26907918 a 26907918  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 314
Target Start/End: Complemental strand, 23550464 - 23550364
Alignment:
Q  215 taagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataactttatgaataattc 313  Q
    ||||||||||| ||||||||||| | |||||| ||  |||| |||| |||||||| ||||||| |||||| |||| ||||||| |||| || ||||||||    
T  23550464 taagtattttatgatagaatctcaaagcatatgatcatgaattttcttctttgatcattctccgatcaatatcataaatgaatgacttaataaataattc 23550365  T
Q  314 a 314  Q
    |    
T  23550364 a 23550364  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 5382775 - 5382891
Alignment:
Q  179 tatcttgaatagtgatgggaaactcttgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctcca 278  Q
    |||||||||||||||||  | | ||||| | | || ||||| ||||| ||||||| ||||| |||||| ||  |||| |||| ||||||||| |||||||    
T  5382775 tatcttgaatagtgatgaaagattcttggaccatcataagtcttttatgatagaacctccaagcatatgatcatgaattttcttctttgatatttctcca 5382874  T
Q  279 atcaat-tcattaatga 294  Q
    | |||| ||||||||||    
T  5382875 aacaatatcattaatga 5382891  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 314
Target Start/End: Original strand, 35756002 - 35756098
Alignment:
Q  219 tattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataactttatgaataattca 314  Q
    ||||||| ||||||||||| | |||||| ||  |||| |||| |||||||| ||||||  |||||| |||| ||||||| |||| || |||||||||    
T  35756002 tattttatgatagaatctcaaagcatatgatcatgaattttcttctttgatcattctcagatcaatatcataaatgaatgacttaataaataattca 35756098  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 14272065 - 14271979
Alignment:
Q  227 gatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataactttatgaataatt 312  Q
    ||||||||||||| |||||| ||  |||| |||| ||||||||| ||||||||||||| |||||||||||| |||| || |||||||    
T  14272065 gatagaatctccaagcatatgatcatgaattttcttctttgatatttctccaatcaatatcattaatgaatgacttaataaataatt 14271979  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 314
Target Start/End: Complemental strand, 29910477 - 29910345
Alignment:
Q  183 ttgaatagtgatgggaaactcttgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatca 282  Q
    |||||||||||||| | | | ||| ||| |||||| | ||||| |||||||||| || | |||| ||  |||| |||| ||||||||| |||| ||||||    
T  29910477 ttgaatagtgatggaagatttttggatcatcctaaatcttttatgatagaatcttcaagtatatgatcatgaattttcttctttgatatttcttcaatca 29910378  T
Q  283 at-tcattaatgaataactttatgaataattca 314  Q
    || |||||||||||| |||| || |||||||||    
T  29910377 atatcattaatgaatgacttaataaataattca 29910345  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 314
Target Start/End: Original strand, 4314390 - 4314490
Alignment:
Q  215 taagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaatcaat-tcattaatgaataactttatgaataattc 313  Q
    ||||| ||||| |||| |||||||| |||||| ||  | || |||| ||||||||||||||||||||||| ||||||| |||| |||| || ||||||||    
T  4314390 taagtcttttatgatataatctccaagcatatgatcatcaattttcttctttgataattctccaatcaatatcattaaagaatgacttgataaataattc 4314489  T
Q  314 a 314  Q
    |    
T  4314490 a 4314490  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 8980575 - 8980641
Alignment:
Q  113 aatgttctattagagacatgaaaaacctttctcaatgtcgaaattgctttgcttgatttctattctt 179  Q
    ||||||||||||  || |||| ||| ||||||||| ||| |||||| |||| |||||||||||||||    
T  8980575 aatgttctattatggatatgagaaatctttctcaaagtcaaaattgttttgtttgatttctattctt 8980641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 280
Target Start/End: Original strand, 48712810 - 48712907
Alignment:
Q  183 ttgaatagtgatgggaaactcttgaatcgtcctaagtattttacgatagaatctccacgcatataatattgaagtttcatctttgataattctccaat 280  Q
    ||||||| |||||| | | ||||| ||| |||||||| | ||| |||||||||| || |||||| ||  |||| |||| || ||||||||||||||||    
T  48712810 ttgaataatgatggcagattcttggatcatcctaagtttattatgatagaatcttcatgcatatgattatgaattttcttccttgataattctccaat 48712907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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