View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_high_29 (Length: 357)
Name: NF18278_high_29
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 54 - 346
Target Start/End: Complemental strand, 11924030 - 11923739
Alignment:
| Q |
54 |
tggttgcgatgctagggcgtgcaatataggcagaacaaaagctccagtcttaccagaacctgtattggaaattccgatcacatattttcctaagaaacac |
153 |
Q |
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| T |
11924030 |
tggttgcagtgctagggcgtgcaatataggcagaacaaaagctccagtcttaccagaactcgtattggaaattccgatcacatcttttcctaagaaacac |
11923931 |
T |
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| Q |
154 |
aaattataaagagtaattcagtaagcattgnnnnnnnnnnnnnnnctatcatattgatgtataaaatttctgtttcaaaatcggatcattatttgggttg |
253 |
Q |
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| T |
11923930 |
aaattataaagagtaattcagtaagcattgaaaatataaaaaaaactatcatattgatgtgtaaaatttatgtttcaaagtcggatcattatttgggttg |
11923831 |
T |
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| Q |
254 |
tatagcaattagcacggattataactctgtaatcattcatcttgttcaattctattagtattttataaaagaaaaaatattatccaatttcat |
346 |
Q |
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| T |
11923830 |
tatagcaattagcacgaattataactctgcaatcattcttcttgttcgattctattagtattttataaaagaaaaaat-ttatccaatttcat |
11923739 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 12119606 - 12119683
Alignment:
| Q |
67 |
agggcgtgcaatataggcagaacaaaagctccagtcttaccagaacctgtattggaaattccgatcacatattttcct |
144 |
Q |
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||||| ||||||||||| ||| ||||||||||||||||||| || || || | ||||| || ||||||| ||||||| |
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| T |
12119606 |
agggcatgcaatataggaagagcaaaagctccagtcttaccggagccagtttgggaaaacccaatcacatcttttcct |
12119683 |
T |
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