View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_high_4 (Length: 742)
Name: NF18278_high_4
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 23676092 - 23675754
Alignment:
| Q |
19 |
acatgatttgtgtaagagatggtaaacagatttaatgagttagactgtaattaattaccatgagttatgtttatgtgttattgtatatgacaagtttgga |
118 |
Q |
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| T |
23676092 |
acatgatttgtgtaagagatggtaagcagatttaatgagttagactgtaattaattaccataagttatgtttatgtgttattgtatatgacaagtctgga |
23675993 |
T |
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| Q |
119 |
acgtaaattaaattcaatttagaaacgaatggtagtaaatagttgttggaggtattttggtcaacttgaggtgcttgtgaaaaatcgataggtgtctaga |
218 |
Q |
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|||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
23675992 |
acgtaaattaaattcagtttggaaacgaacggtagtaaatagttgttggaggtattttggtcaacttgaagtgcctgtgaaaaatcgataggtgtctaga |
23675893 |
T |
|
| Q |
219 |
gagaagttttcatgtgggtttgagtcaagtgtataggcttgcataaataaactcttataccgatcatttggagatcacaaaacaaagtctctatttattc |
318 |
Q |
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| T |
23675892 |
gagaaattttcatgtgggtttgagtcaagtgtataggcttgcataaataaactcttataccgatcatttggagatcacaaaacaaaatctctatttattc |
23675793 |
T |
|
| Q |
319 |
cattgatcatcatcaatagtttaaaagtaaacataactt |
357 |
Q |
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| T |
23675792 |
cattgatcatcatcaatagtttaaaagtaaacataactt |
23675754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 439 - 737
Target Start/End: Complemental strand, 23675673 - 23675375
Alignment:
| Q |
439 |
tgatagtggagaaaagactccatattacacaacaaaagataaagnnnnnnnnttcataactagtattttccgactcctttgtcctattcataatcccacc |
538 |
Q |
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| T |
23675673 |
tgatagtggagaaaagactccatattacacaacaaaagataaagaaaaaaaattcataactagtattttccgactcctttgtcctattcataatcccacc |
23675574 |
T |
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| Q |
539 |
tcatttccaacctcctcttgatctttaattgtcatttctttcatcttccgatcaacctccttcaaattctcatcaataaaagatgaaaaatcattaagat |
638 |
Q |
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| T |
23675573 |
tcatttccaacctcgtcttgatctttaattgtcatttctttcatcttccgatcaacctccttcaaattctcatcaataaaagatgaaaaatcattaagat |
23675474 |
T |
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| Q |
639 |
catatttgctcattgaatttccattaaattctacggtttgaatataatgatcaatgatattggtcatttccttctttctagtttcctccctttgcttct |
737 |
Q |
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| T |
23675473 |
catatttgctcattgaatttccattaaattctacggtttgaatataatgatcaatgatattggtcatttccttctttctggtttccaacctttgcttct |
23675375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 26457372 - 26457709
Alignment:
| Q |
19 |
acatgatttgtgtaagagatggtaaacagatttaatgagttagactgtaattaattaccatgagttatgtttatgtgttattgtatatgacaagtttgga |
118 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||| ||||||||| | || | || |
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| T |
26457372 |
acatgatttgtgta-gagatggtaaatagatttaatgagttaaattgtaattaatgaccatgagttatgtttatgtgttagtgtatatgataggtctaga |
26457470 |
T |
|
| Q |
119 |
acgtaaattaaattcaatttagaaacgaatggtagtaaatagttgttggaggtattttggtcaacttgaggtgcttgtgaaaaatcgataggtgtctaga |
218 |
Q |
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| T |
26457471 |
actaaaattaaatgtagtttggaaacgaatggtagttaattgttgttggaggtattttggtcaacttgaggtgcctatgaaaaaacactaggtgcctaaa |
26457570 |
T |
|
| Q |
219 |
gagaagttttcatgtgggtttgagtcaagtgtataggcttgcataaataaactcttataccgatcatttggagatcacaaaacaaagtctctatttattc |
318 |
Q |
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||||| ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||||| |
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| T |
26457571 |
gagaaattttcgtgtgggtttgagtcaagtgtatgagcttgcataaatgaactcttataccgatcatttggagatcacaaaacaaattgtctatgtattc |
26457670 |
T |
|
| Q |
319 |
cattgatcatcatcaatagtttaaaagtaaacataactt |
357 |
Q |
| |
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||||||| |||||| || |||||||||||||||||||| |
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| T |
26457671 |
cattgattatcatcggtaatttaaaagtaaacataactt |
26457709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 491 - 737
Target Start/End: Original strand, 26457847 - 26458093
Alignment:
| Q |
491 |
ttcataactagtattttccgactcctttgtcctattcataatcccacctcatttccaacctcctcttgatctttaattgtcatttctttcatcttccgat |
590 |
Q |
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|||| |||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |
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| T |
26457847 |
ttcaaaactagtatttttcggatccttagtcctattcataatcccaccccatttccaacctccttttgatctttgattgtcatttctttcatcttcagat |
26457946 |
T |
|
| Q |
591 |
caacctccttcaaattctcatcaataaaagatgaaaaatcattaagatcatatttgctcattgaatttccattaaattctacggtttgaatataatgatc |
690 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
26457947 |
taacctccttcaaattctcatcaataaaagatgaaaaatcattgagatcagatttgctcatcgaatttccattaaattctatggtttgaatataatgatc |
26458046 |
T |
|
| Q |
691 |
aatgatattggtcatttccttctttctagtttcctccctttgcttct |
737 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
26458047 |
aatgatattggtcatttccatctttctggtttcctccctttgcttct |
26458093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 540 - 725
Target Start/End: Complemental strand, 27641346 - 27641161
Alignment:
| Q |
540 |
catttccaacctcctcttgatctttaattgtcatttctttcatcttccgatcaacctccttcaaattctcatcaataaaagatgaaaaatcattaagatc |
639 |
Q |
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||||||||||||||||| ||||| |||| |||| |||||||||| ||| |||||| |||||||||||||||||| | | || |||||||||||||| |
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| T |
27641346 |
catttccaacctcctctcaatcttcaattcgcattcctttcatcttttgattgacctccctcaaattctcatcaataacataggacaaatcattaagatc |
27641247 |
T |
|
| Q |
640 |
atatttgctcattgaatttccattaaattctacggtttgaatataatgatcaatgatattggtcatttccttctttctagtttcct |
725 |
Q |
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| T |
27641246 |
aggtttgctcattaaatatccattaaattctgtggtatgaatgaaatgatgaatgatattggtcatttccttctttctggtttcct |
27641161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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