View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_high_43 (Length: 292)
Name: NF18278_high_43
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 36232011 - 36231739
Alignment:
| Q |
1 |
aaagagcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatggatgcatgggtgcaatttcatctttgcaacaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36232011 |
aaagagcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatggatgcatgggtgcaatttcatctttgcaacaaca |
36231912 |
T |
|
| Q |
101 |
agttcaatcattaataggtgaacttaatgctataagggaagaaatacataaatacaaactcatggaagctaatatgcttccttcttcagaggatgtatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36231911 |
agttcaatcattaataggtgaacttaatgctataagggaagaaatacataaatacaaactcatggaagctaatatgcttccttcttcagaggatgtatca |
36231812 |
T |
|
| Q |
201 |
attgctactcttccaccttcaacatcattaccaatgcttccttcttccatttacacacaacagacaaatccta |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36231811 |
attgctactcttccaccttcaacatcattaccaatgcttccttcttccatttacacacaacagacaaatccta |
36231739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 31869056 - 31868948
Alignment:
| Q |
1 |
aaagagcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatggatgcatgggtgcaatttcatctttgcaacaaca |
100 |
Q |
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||||||||||||||||||||||| | ||||||||||| ||| |||| |||||||||| ||||||||||||||||||||||| ||||| || |||||||| |
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| T |
31869056 |
aaagagcagatgcagcaaatagtatggtttatgaagctaatttaaggttaagagatcctgtttatggatgcatgggtgcaatatcatcattacaacaaca |
31868957 |
T |
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| Q |
101 |
agttcaatc |
109 |
Q |
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||| ||||| |
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| T |
31868956 |
agtccaatc |
31868948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 35919663 - 35919729
Alignment:
| Q |
1 |
aaagagcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatgg |
67 |
Q |
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||||||||||||||| ||| |||||||| ||||||||||||| |||| | || |||||||||||||| |
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| T |
35919663 |
aaagagcagatgcagtaaacagtttagtctatgaagcaaatgcaagagtgagggatccagtttatgg |
35919729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 43200753 - 43200646
Alignment:
| Q |
2 |
aagagcagatgcagcaaatagtttagtttatgaagcaaatgtaagactaagagatccagtttatggatgcatgggtgcaatttcatctttgcaacaacaa |
101 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
43200753 |
aagagcagatgcagcaaatagtcttgtttatgaagcaaatgtgaggctaagagatccagtttatggatgcatgggtgcaatttctgcattgcaacaacag |
43200654 |
T |
|
| Q |
102 |
gttcaatc |
109 |
Q |
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|||||||| |
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| T |
43200653 |
gttcaatc |
43200646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 26665865 - 26665914
Alignment:
| Q |
21 |
agtttagtttatgaagcaaatgtaagactaagagatccagtttatggatg |
70 |
Q |
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|||||||||| ||||||||||| |||| | |||||||| ||||||||||| |
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| T |
26665865 |
agtttagtttttgaagcaaatgcaagagtgagagatcctgtttatggatg |
26665914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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