View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18278_high_58 (Length: 254)

Name: NF18278_high_58
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18278_high_58
NF18278_high_58
[»] chr5 (3 HSPs)
chr5 (42-254)||(1668126-1668338)
chr5 (45-254)||(1679662-1679871)
chr5 (45-254)||(1660864-1661073)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 42 - 254
Target Start/End: Original strand, 1668126 - 1668338
Alignment:
Q  42 taacaaagttgagtacccaaagttggatcatctgtaatgggtttcaatgcaactttatttcttacttcagcaaacactttatcatacaattgttgtggta 141  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  1668126 taacaaagttgagtacccaaacttggatcatctgtaatgggtttcaatgcaactttatttcttacttcagcaaacactttatcatacaattgttgcggca 1668225  T
Q  142 atagaattggtggtgttccggaatcaaccaacatgttagcctttccaatagtactattcatgggaaaatatgtgtcttccacactaatgcctcgtaatga 241  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||     
T  1668226 atagaattggtggtgttcctgaatcaaccaacatgttagcctttccaatagtactattcatgggaaaatatgtgtcttccacactaatacctagtaatgt 1668325  T
Q  242 aacaaaatatgat 254  Q
    |||||||||||||    
T  1668326 aacaaaatatgat 1668338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 45 - 254
Target Start/End: Original strand, 1679662 - 1679871
Alignment:
Q  45 caaagttgagtacccaaagttggatcatctgtaatgggtttcaatgcaactttatttcttacttcagcaaacactttatcatacaattgttgtggtaata 144  Q
    |||||||||| ||||||| |||||||||| |||||||||| ||||| |||||| ||| | |||||| || ||||| ||||||||||||||||||||||||    
T  1679662 caaagttgaggacccaaacttggatcatccgtaatgggttccaatggaactttgtttttgacttcaacatacactctatcatacaattgttgtggtaata 1679761  T
Q  145 gaattggtggtgttccggaatcaaccaacatgttagcctttccaatagtactattcatgggaaaatatgtgtcttccacactaatgcctcgtaatgaaac 244  Q
     | | ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||    
T  1679762 tattcggtggtgttcccgaatcaaccaacatgttacccttttcaatagtactattcatgggaagatatgtgtcttccacactaatacctagtaatgtaac 1679861  T
Q  245 aaaatatgat 254  Q
    | ||||||||    
T  1679862 ataatatgat 1679871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 45 - 254
Target Start/End: Original strand, 1660864 - 1661073
Alignment:
Q  45 caaagttgagtacccaaagttggatcatctgtaatgggtttcaatgcaactttatttcttacttcagcaaacactttatcatacaattgttgtggtaata 144  Q
    |||||||||| ||||||| ||||||||| ||||||| |||  |||| ||| || ||| | |||||| || ||||| ||||||||||||||||||||||||    
T  1660864 caaagttgaggacccaaacttggatcatttgtaatgagttctaatggaacattgtttttgacttcaacatacactctatcatacaattgttgtggtaata 1660963  T
Q  145 gaattggtggtgttccggaatcaaccaacatgttagcctttccaatagtactattcatgggaaaatatgtgtcttccacactaatgcctcgtaatgaaac 244  Q
     | | ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||    
T  1660964 tattcggtggtgttcccgaatcaaccaacatgttacccttttcaatagtactattcatgggaagatatgtgtcttccacactaatacctagtaatgtaac 1661063  T
Q  245 aaaatatgat 254  Q
    ||||||||||    
T  1661064 aaaatatgat 1661073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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