View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_high_6 (Length: 712)
Name: NF18278_high_6
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 65 - 494
Target Start/End: Complemental strand, 40898010 - 40897586
Alignment:
| Q |
65 |
ggtgtatgttttggctgtacgaagcaatggatttgatgcgagttataagaaaatgagattggctctattgagtgtaatgttggtggtgatacttgttgct |
164 |
Q |
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|||| ||||||||||||||| ||| ||||||||||||| |||||| ||||||||| ||||||||||||||| ||||||||| || |||||||||||||| |
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| T |
40898010 |
ggtgaatgttttggctgtaccaagaaatggatttgatgtgagttacaagaaaatgggattggctctattgaatgtaatgttagtaatgatacttgttgct |
40897911 |
T |
|
| Q |
165 |
gtcttaggttttctatttatagatggtagagccataaggagagaaatgcatctgtgtgcctcactcatcaaacaaaaagaggccactcaccaagttgaga |
264 |
Q |
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| T |
40897910 |
gtcttaggttttctatttatagatggtagagccataaggagagaaatgcatttgtgtgcctcacttatcaaacaaaaagaggccactcaccaagctgaga |
40897811 |
T |
|
| Q |
265 |
ggaaaaaatatgaacaagagcctcgtcgttgctagcgccagccacgacgtttgcacttctcttgcaggcattactgctctcataaaaatttcatcgaagt |
364 |
Q |
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| T |
40897810 |
g-aaaaaatatgaacaagagcctcgccgttgctagcgctagccatgatgttcgcacttctctcgcaggcattactgctctcataaaaatttcatctaagt |
40897712 |
T |
|
| Q |
365 |
tagttagttccctctggttcagaactggcttccaatttaattcaaatggaggatcgtacacaagacttactgggtaacaacatcattggttaattttata |
464 |
Q |
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| T |
40897711 |
tagtt----ccacctggttcagaattggcttccaatttaatccaaatggaggattgtacacaagacttactaggtaacaacatcattggttcattttatg |
40897616 |
T |
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| Q |
465 |
ctgcccaatttttatgattgtacttgttat |
494 |
Q |
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| T |
40897615 |
ctgcacaatttttctgattgtacttattat |
40897586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 514 - 698
Target Start/End: Complemental strand, 40895777 - 40895593
Alignment:
| Q |
514 |
ctaaaaaggaatgatcctaatcctccttatgattacatcttaatggattgccaggtataatgaccatgtactatggttaggtttcttcaccttttctttt |
613 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||| ||||||| |
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| T |
40895777 |
ctaaaaagagatgatcctaatcctccttatgattacatcttaatggattgccaggtataatgaccatggactatggtttgatttcttctcctcttctttt |
40895678 |
T |
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| Q |
614 |
gttagctttatcaaacttaggaaataattgatttttcatcgttagaacaatatgtgctttaattttatataatgaatgaattcaa |
698 |
Q |
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| T |
40895677 |
gttatcttcatcaaacttaggaaataattgatttttcattgttagaacaatatatgctttcattttatatgatgaacgaattcaa |
40895593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 530 - 570
Target Start/End: Complemental strand, 39028646 - 39028606
Alignment:
| Q |
530 |
ctaatcctccttatgattacatcttaatggattgccaggta |
570 |
Q |
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| T |
39028646 |
ctaatcctccttatgattatatcttaatggattgtcaggta |
39028606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 3e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 528 - 698
Target Start/End: Complemental strand, 6996069 - 6995899
Alignment:
| Q |
528 |
tcctaatcctccttatgattacatcttaatggattgccaggtataatgaccatgtactatggttaggtttcttcaccttttcttttgttagctttatcaa |
627 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6996069 |
tcctaatcctccttatgattacatcttaatggattgccaggtataatgaccatgtactatggttaggtttcttctccttttcttttgttagctttatcaa |
6995970 |
T |
|
| Q |
628 |
acttaggaaataattgatttttcatcgttagaacaatatgtgctttaattttatataatgaatgaattcaa |
698 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6995969 |
acttaggaaatgattgatttttcatcgttagaacaatatgtgctttaattttatatgatgaatgaattcaa |
6995899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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