View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_high_67 (Length: 239)
Name: NF18278_high_67
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_high_67 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 33698469 - 33698650
Alignment:
| Q |
9 |
agttgagctaagatagttacattacctagacataattcaaatatgttattatataatcctgtttaacaagaaaataactattcaattttataatcacata |
108 |
Q |
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| T |
33698469 |
agttgagctaagatagttacattacctagacataattaaaatatgttattatataatcttgtttaacaagaaaataactattcaattttataatcacata |
33698568 |
T |
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| Q |
109 |
ttggattaaacaagtactcctatatttaagggaataattgtgaagacataagacttctcatatatagtaaacttttgtaacc |
190 |
Q |
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| T |
33698569 |
ttggattaaacaagtactcctatatttaagggaataattgtgaagacataagacttatcatatatagtaaacttttgtaacc |
33698650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 33690000 - 33690170
Alignment:
| Q |
15 |
gctaagatagttacattacctagacataattcaaatatgttattatataatcctgtttaacaagaaaataactattcaattttataatcacatattggat |
114 |
Q |
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| T |
33690000 |
gctaagattgttacattatcttgacatagttagaatgtgttaccatatattcctgcttaaaaaggaaataaccactcaatggtataaacacacattggat |
33690099 |
T |
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| Q |
115 |
taaacaagtactcctata--tttaagggaataattgtgaagacataagacttctcatatatagtaaacttt |
183 |
Q |
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| T |
33690100 |
caaataagtacttgtatagatttaggggaatacatgcgaagacataagacttctcatacatagcaaacttt |
33690170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 33669658 - 33669808
Alignment:
| Q |
18 |
aagatagttacattacctagacataattcaaatatgttattatataatcctgtttaacaagaaaataactattcaattttataatcacatattggattaa |
117 |
Q |
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| T |
33669658 |
aagattgttacattatctggacataattaaaagatgtttttatataactctgt--aaaagggtaatgactactcaatgatataaacacacattaaattaa |
33669755 |
T |
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| Q |
118 |
acaagtactcctatatttaagggaataattgtgaagacataagacttctcata |
170 |
Q |
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| T |
33669756 |
acaagtacttgtatattttggagaataaatgtgaagacataagacttctcata |
33669808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 82645 - 82480
Alignment:
| Q |
18 |
aagatagttacattacctagacataattcaaatatgttattatataatcctgtttaacaagaaaataactattcaattttataatcacatattggattaa |
117 |
Q |
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| T |
82645 |
aagatagttacattacctggatataactaaaatatgttattatataatcctgtttaacaagaaaataactattcaattttataaacacacattggattaa |
82546 |
T |
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| Q |
118 |
acaagtactcctatatttaagggaataattgtgaagacataagacttctcatatatagtaaacttt |
183 |
Q |
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| T |
82545 |
acaagtactcctatatttaagggaataattgtgaagacataagacttctcatatatagtaaacttt |
82480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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