View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_high_8 (Length: 676)
Name: NF18278_high_8
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 17 - 663
Target Start/End: Complemental strand, 55696623 - 55695975
Alignment:
| Q |
17 |
aactggttttgatttgactgcacatagaattattgttctgcagctttgtacagactataggagcatcccatctgttgtcctctagttggatactttgaga |
116 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696623 |
aactggttttgatttgactgcacatagaattatcgttctgcagctttgtacagactataggagcatcccatctgttgtcctctagttggatactttgaga |
55696524 |
T |
|
| Q |
117 |
aagttgtcaaagttctgttttggaaagtagtcaagggatgtaattttattgatcttggtcaaatgtttatatggataaaatattaataatacatgatttg |
216 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55696523 |
aagttatcaaagttctgttttggaaagtagtcaagggatgtaattttattgatcttggtcaaatgtttatatggataaaatattaataatacaggatttg |
55696424 |
T |
|
| Q |
217 |
aaggannnnnnnnnnatatctacattctagttaatagctgctggttcgtcatcgggagtgtggcacaacaattaagtttgtgaagtgctagcagcgcatt |
316 |
Q |
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| T |
55696423 |
aaggattttttttt-atatctacattcaagttaatagctgctggttcgtcatcgggagtgtggcacaaccattaagtttgtgaagtgctagcagcgcatt |
55696325 |
T |
|
| Q |
317 |
ctcgaacactttctgaaatgtgttatgtatacgtttggtttggcgatagcatcggttttcttgcgttccaaggtaaatgcattgtgcaaattgggaaact |
416 |
Q |
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| T |
55696324 |
ctcgaacactttctgaaatgtgttatgtatacgtttggtttggcgatagcatcagttttcttgcattccaaggtaaatgcattgttcaaattgggaaact |
55696225 |
T |
|
| Q |
417 |
acgtggtgtagcagcaaccaaacattggatcaagattctctctattg--nnnnnnnntttgaggcaataatgtagagatcttaatcagtgatcttgacca |
514 |
Q |
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| T |
55696224 |
acgtggtgtagcagcaaccaaacacgggatcaagattctctctattgaaaaaaaaaacttgaggaaataatgtagagatcttaatcactgatcttgacca |
55696125 |
T |
|
| Q |
515 |
ttgataatatggagatcaatggttaagatcacctcattatttcctcaagnnnnnnnnncccaattgagagaatccatttccctagtttctatggg--atc |
612 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
55696124 |
ttgataatatggagatcaatggttaagatctcctcattatttcctcaag-ttttttttcccaattgagagaatccatttccctagtttctatgggatatc |
55696026 |
T |
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| Q |
613 |
cctatgaatttcaaatttcagtcagtaaatagtgttttagagattgtgatg |
663 |
Q |
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| T |
55696025 |
cctatgaatttcaaatttcagtcagtaaatagtgttttagagattgtgatg |
55695975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 545
Target Start/End: Original strand, 7898163 - 7898204
Alignment:
| Q |
504 |
gatcttgaccattgataatatggagatcaatggttaagatca |
545 |
Q |
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| T |
7898163 |
gatcttgaccattgataatgtggagatcaatggtcaagatca |
7898204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 544
Target Start/End: Original strand, 26919500 - 26919532
Alignment:
| Q |
512 |
ccattgataatatggagatcaatggttaagatc |
544 |
Q |
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| T |
26919500 |
ccattgataatatggagatcaatggttaagatc |
26919532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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