View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18278_low_11 (Length: 627)
Name: NF18278_low_11
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 10 - 614
Target Start/End: Complemental strand, 27771841 - 27771234
Alignment:
| Q |
10 |
aagaatatcgccgcgaaaattgtcaagtttcaacctttggtttagatgatgctcaaataaaatccattgcagtttttagctacaaaaaaggagatgcnnn |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27771841 |
aagaaaatcgccgcgaaaattgtcaagtttcaacctttggtttagatgatgctcaaataaaatccattgcagtttttagctacaaaaaaggagatgcttt |
27771742 |
T |
|
| Q |
110 |
nnnnagtactactgtcacagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatctt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27771741 |
ttttagtactactgtcacagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatctt |
27771642 |
T |
|
| Q |
210 |
ccttgtattgatacatggcttaaatctaactctagttgtcctctatgtcgttctagcgtattcacttcgaatgcttcaatacacaatgttcaagttcccg |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| | |
|
|
| T |
27771641 |
ccttgtattgatacatggcttaaatctaactctagttgtcctctatgtcgttctagcgtattcacttcgaatgcttcaacacatcatgttcaagttccgg |
27771542 |
T |
|
| Q |
310 |
cgacggttatagaacttccttcaagaactgaaactttttcagaaga---acaaatagttatggaagaagcaatgattcatcatagtagagttgattcaaa |
406 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||| || |||||||||||||| || || |
|
|
| T |
27771541 |
ttacaattatagaacttccttcaagaaatgaaacttttttagaagagcaacaaatagttgtggaagaagcaatgatgcaacatagtagagttgagtcgaa |
27771442 |
T |
|
| Q |
407 |
ggcgccttcattgcgcgcttttagtgatttgtgtaatttgcaaggaagagaaagaataatcgaaattagagacgaagtttgtgaatcgatcggaaggtca |
506 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27771441 |
ggcgccatcattgcgcgcttttagtgatttgtgtaatttgcaaggaagagaaagaataatcgaaattagagacgaagtttgtgaatcgatcggaaggtca |
27771342 |
T |
|
| Q |
507 |
gtgtctatggatcattcatttcaaaatggtttttcaattggtgatgtgttgaatatgaatgaagatgaagatgattcttgtgaagaaggatgttcaatgg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27771341 |
gtgtctatggatcattcatttcaaaatggtttttcaattggtgatgtgttgaatatgaatgaagatgaagatgattcttgtgaagaaggatgttcaatgg |
27771242 |
T |
|
| Q |
607 |
atgttagt |
614 |
Q |
| |
|
|||||||| |
|
|
| T |
27771241 |
atgttagt |
27771234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 37504182 - 37504077
Alignment:
| Q |
126 |
acagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacat |
225 |
Q |
| |
|
||||| ||||| ||||||||| |||| |||||||| || || ||| | ||| |||| || | ||||| ||| | ||||||| | |||||||||||||| | |
|
|
| T |
37504182 |
acagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcccttgtattgatactt |
37504083 |
T |
|
| Q |
226 |
ggctta |
231 |
Q |
| |
|
|||||| |
|
|
| T |
37504082 |
ggctta |
37504077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 126 - 260
Target Start/End: Complemental strand, 12617922 - 12617788
Alignment:
| Q |
126 |
acagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacat |
225 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| ||||| ||| ||||||||||||| | |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
12617922 |
acagattgttctgtttgtctaaacgagtttcaagacgatgagagtattagacttttacctaaatgtagccatgcttttcatcttccttgtattgatacat |
12617823 |
T |
|
| Q |
226 |
ggcttaaatctaactctagttgtcctctatgtcgt |
260 |
Q |
| |
|
|||| |||||| | |||| ||||||||| |||||| |
|
|
| T |
12617822 |
ggctcaaatctcattctaattgtcctctttgtcgt |
12617788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 37227965 - 37227861
Alignment:
| Q |
127 |
cagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacatg |
226 |
Q |
| |
|
|||||||||| |||||| | ||||||||| |||| ||||| | | |||||||||| |||| ||||||||||| ||||||| | |||||||||||||| || |
|
|
| T |
37227965 |
cagattgttctgtttgtttgagtgagtttgaagaagatgagaatcttagacttttgccaaagtgtaaccatgcttttcatttaccttgtattgatacttg |
37227866 |
T |
|
| Q |
227 |
gctta |
231 |
Q |
| |
|
||||| |
|
|
| T |
37227865 |
gctta |
37227861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 1867028 - 1867112
Alignment:
| Q |
147 |
agtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacatggctta |
231 |
Q |
| |
|
||||||||| |||| ||||| | | ||||||||||||| | |||| | |||| ||||||| | | |||||||||||| ||||||| |
|
|
| T |
1867028 |
agtgagtttgaagaagatgagaatcttagacttttacctaagtgtcatcatgcttttcatttactttgtattgatacttggctta |
1867112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University