View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_12 (Length: 603)
Name: NF18278_low_12
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 17 - 593
Target Start/End: Original strand, 47136832 - 47137408
Alignment:
| Q |
17 |
acttattaatgtaccaacagcaccaaacgacatgatagttatgaagttaacaaaaaaccgcttctttttaacctgaaacctgaaataaattacatttatg |
116 |
Q |
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| T |
47136832 |
acttattaatgtaccaacagcaccaaacgacatgatagttatgaagttaacaaaaaaccgcttctttttaacctgaaacctgaaataaattacagttatg |
47136931 |
T |
|
| Q |
117 |
tataagctatttctataatgaaaccagaacatagttaaactatttccacaacctatcatataaactttatattgaaatatactaaaaacaaattcagaac |
216 |
Q |
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| T |
47136932 |
tataagctatttctataatgaaaccagaacatagttaaactatttccacaacctatcatataaactttatattgaaatatactaaaaacaaattcagaac |
47137031 |
T |
|
| Q |
217 |
acaccataaaccattttcataagattttaacaaagactttcaagtgttcctcaatcaaacaaacataaatagagcatggtacnnnnnnnttacccggcat |
316 |
Q |
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| T |
47137032 |
acaccataaaccattttcataagattttaacaaagactttcaagtgttcctcaatcaaacaaacataaatagagcatggtacaaaaaaattacccggcat |
47137131 |
T |
|
| Q |
317 |
taaagatgatgggaggtagaagatatatnnnnnnnngatcttcactaaaaactagtagatgcgagcttttaccaccacttatccacaaaataaccacacc |
416 |
Q |
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| T |
47137132 |
taaagatgatgggaggtagaagatatataaaaaaaagatcttcactaaaaactagtagatgcgagcttttaccaccacttatccacaaaataaccacacc |
47137231 |
T |
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| Q |
417 |
ggtgcatagaccctgatcaaagcaatccacatgaaatttagtcaccaccataccactcacacttcacaccaatgtttttaaaaaccgaacttaccagacg |
516 |
Q |
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| T |
47137232 |
ggtgcatagaccctgatcaaagcaatccacatgaaatttagtcaccaccataccactcacacttcacaccaatgtttttaaaaaccgaacttaccagacg |
47137331 |
T |
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| Q |
517 |
attcaaccggttgaaccgtgaattggcaccatttatgattcagatattttagtggctcaactataattttgcctatg |
593 |
Q |
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| T |
47137332 |
attcaaccggttgaaccgtgaattggcaccatttatgattcagatattttagtggctcaactataattttccctatg |
47137408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 36489351 - 36489261
Alignment:
| Q |
20 |
tattaatgtaccaacagcaccaaacgacatgatagttatgaagttaacaaaaaaccgcttctttttaacctgaaacctgaaataaattaca |
110 |
Q |
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||||||||| |||| ||| ||||| || ||||||| |||||||| ||||||||| |||| || || || |||||||||||||| |||||| |
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| T |
36489351 |
tattaatgtgccaatagctccaaatgatgtgatagtcatgaagttgacaaaaaactgctttttctttacttgaaacctgaaatatattaca |
36489261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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