View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_13 (Length: 585)
Name: NF18278_low_13
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 189 - 568
Target Start/End: Original strand, 26839468 - 26839844
Alignment:
| Q |
189 |
atgaaagaaatggtggaggaaatcaacatccctacagaaactaagtcgttacagaacatttgaattgcatagttgctattcctgataaaactaattgaat |
288 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
26839468 |
atgaaagaaatggtggaggaaatcaaaatccctacagaaactaagtcgttacagaacatttgaattgaatagttgctattcctgataaaactaattaaat |
26839567 |
T |
|
| Q |
289 |
ctgcatatgcataagcaacctctatagtacaaaaataaaagatataatctaatttatggactaagacacaatgttattcaacaaaagagaaaaacctttt |
388 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26839568 |
ttgcatatgcatcagcaacctctatagtacagaaataaaagatataatctaatttatggactaagacacaatgctattcaacaaaagagaaaaacctttt |
26839667 |
T |
|
| Q |
389 |
aaattaagcaaagtagtactattgctattctaataagagaaaatagcaaattagatagaaatgcaattcaaaaactggacgaagatcaaaactggagtct |
488 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26839668 |
aaattaagcaaagtag---tattgctattctaataagagaaaatagcaaattagatagaaatgcaattcaaaaacaggacgaagatcaaaactggagtct |
26839764 |
T |
|
| Q |
489 |
gaaacttatgcagaactatagaattgtaagacactacctctaaaatcaagtttgtcaatgtaaaaatgctatctaaatcc |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26839765 |
gaaacttatgcagaactatagaattgtaagacactacctctaaaatcaagtttgtcaatgtaaaaatgctatctaaatcc |
26839844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 421 - 526
Target Start/End: Original strand, 34507428 - 34507533
Alignment:
| Q |
421 |
ataagagaaaatagcaaattagatagaaatgcaattcaaaaactggacgaagatcaaaactggagtctgaaacttatgcagaactatagaattgtaagac |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | |||||||||| || ||||||||||||||||||||| |
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|
| T |
34507428 |
ataagagaaaatagcaaattagatagaaatccaattcaaaaacaggacgaagatcaaaactgaattctgaaacttgtgtagaactatagaattgtaagac |
34507527 |
T |
|
| Q |
521 |
actacc |
526 |
Q |
| |
|
|||||| |
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|
| T |
34507528 |
actacc |
34507533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 421 - 526
Target Start/End: Complemental strand, 29354621 - 29354516
Alignment:
| Q |
421 |
ataagagaaaatagcaaattagatagaaatgcaattcaaaaactggacgaagatcaaaactggagtctgaaacttatgcagaactatagaattgtaagac |
520 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| | |||||||||| || |||| |||||||||| |||| |
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| T |
29354621 |
ataagagaaaatagcaaattagaaagaaatccaattcaaaaacaggacgaagatcaaaactgaattctgaaacttgtgtagaaatatagaattgcaagat |
29354522 |
T |
|
| Q |
521 |
actacc |
526 |
Q |
| |
|
|||||| |
|
|
| T |
29354521 |
actacc |
29354516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 26839262 - 26839307
Alignment:
| Q |
11 |
cagagatgcaaattgtctttgttggagttgttttcgttgaagcagt |
56 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| ||||||||||| |
|
|
| T |
26839262 |
cagagatgcaaatggtctttgttggagctgtttttgttgaagcagt |
26839307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 189 - 568
Target Start/End: Original strand, 50974567 - 50974941
Alignment:
| Q |
189 |
atgaaagaaatggtggaggaaatcaacatccctacagaaactaagtcgttacagaacatttgaattgcatagttgctattcctgataaaactaattgaat |
288 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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|
| T |
50974567 |
atgaaagaaatggtggaggaaattaacatctctacgtaaactaaatcgttacagaacatttgaattgcatagttgctattcccgataaaactaattaaat |
50974666 |
T |
|
| Q |
289 |
ctgcatatgcataagca--acctctatagtacaaaaataaaagatataatctaatttatggactaagacacaatgttattcaacaaaagagaaaaacctt |
386 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
50974667 |
ttgcatatgcataagcaccacctctatagtacataaataaaagatataatctaatttatggactaagatacaatgctattcaacaaaagagaaaaacctt |
50974766 |
T |
|
| Q |
387 |
ttaaattaagcaaagtagtactattgctattctaataagagaaaatagcaaattagatagaaatgcaattcaaaaactggacgaagatcaaaactggagt |
486 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
50974767 |
ttaaattaagcaaagtagta---ttgctattctaataagagaaaatagcaa----gatagatatgaaattcaaaaacaggacgaagatcaaaactggagt |
50974859 |
T |
|
| Q |
487 |
ctgaaacttatgcagaactatagaattgtaagacactacctctaaaatcaagtttgtcaatgtaaaaatgctatctaaatcc |
568 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
50974860 |
ctgaaatttatgcagaactatagaattgtaagacactacctctaaaatcaagtctgtgaatgtaaaaatgctatctaaatcc |
50974941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 226 - 318
Target Start/End: Original strand, 43599977 - 43600071
Alignment:
| Q |
226 |
aaactaagtcgttacagaacatttgaattgcatagttgctattcctgataaaactaattgaatctgcatatgcataagca--acctctatagtac |
318 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||| || |||||| | |||| ||||||||||||| |
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|
| T |
43599977 |
aaactaagtcgttacaaaacatttaaattgcatagttgctattcctcataaaactaattaaatttgtatatgcctgagcactacctctatagtac |
43600071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 50974358 - 50974402
Alignment:
| Q |
12 |
agagatgcaaattgtctttgttggagttgttttcgttgaagcagt |
56 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
50974358 |
agagatgcaaatggtctttgttggagctgttttccttgaagcagt |
50974402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 226 - 318
Target Start/End: Original strand, 14834014 - 14834108
Alignment:
| Q |
226 |
aaactaagtcgttacagaacatttgaattgcatagttgctattcctgataaaactaattgaatctgcatatgcataagca--acctctatagtac |
318 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||| || |||||| | |||| ||||||||||||| |
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|
| T |
14834014 |
aaactaagtcgttacaaaacatttaaattgcatagttgctattcctcataaaactaattaaatttgtatatgcctgagcaccacctctatagtac |
14834108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 464
Target Start/End: Complemental strand, 52589796 - 52589754
Alignment:
| Q |
422 |
taagagaaaatagcaaattagatagaaatgcaattcaaaaact |
464 |
Q |
| |
|
||||| ||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
52589796 |
taagataaagtagcaaattagatagcaatgcaattcaaaaact |
52589754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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