View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_16 (Length: 522)
Name: NF18278_low_16
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 52578996 - 52578505
Alignment:
| Q |
1 |
tgacatggtcaatctctattctctactgttctgcagacaaattcaagtttgattgagggtcgatggcagctcattttcactacaagacctggaacagcat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52578996 |
tgacatggtcaatctctattctcttctgttctgcagacaaattcaagtttgattgagggtcgatggcagctcattttcaccacaagacctggaacagcat |
52578897 |
T |
|
| Q |
101 |
cacccattcaggttgttattattatgtcactgaaaagtaaatctctaatggaaagctgcatatactatttttctcatctataaatttagaaatatacttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52578896 |
cacccattcaggttgttattattatgtcactgaaaagtaaatctctaatggaaagctgcatatactatgtttctcatctataaatttagaaatatacttc |
52578797 |
T |
|
| Q |
201 |
caacttgataatacctatctaacacaacaaggatcactcacctgttcaatagttcaacacatgcttaatcatcatatcatatgactctcaatatggtatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
52578796 |
caacttgataatacctatctaacacaacaaggatcactcacctgttcaatagttcaacacatgcttaatga---------------ctcaatatggtatt |
52578712 |
T |
|
| Q |
301 |
ctatattgctctttcagagaacgtttgttggggttgannnnnnnagtgtatttcaagaggtttatcttcaaacaaatgatccacgcgtaaccaatattgt |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578711 |
ctatattgctctttcagagaacgtttgttggggttgatttttttagtgtatttcaagaggtttatcttcaaacaaatgatccacgcgtaaccaatattgt |
52578612 |
T |
|
| Q |
401 |
gtcattttctgatgccatcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacacttctgtgttaaattc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578611 |
gtcattttctgatgccatcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacacttctgtgttaaattc |
52578512 |
T |
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