View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_17 (Length: 499)
Name: NF18278_low_17
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 267 - 481
Target Start/End: Original strand, 27644128 - 27644344
Alignment:
| Q |
267 |
aatcaaaggaatagttcaacaatgacgcattgttgacatataagaatccaaaatcaagaaaattagtgttgatttgtaaaagtattatgaataaacaaga |
366 |
Q |
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| T |
27644128 |
aatcaaaggaatagttcaacaatgacgcattgttgacatataagaatccaaaatcaagaaaattagtgttgatttgtaaaagtattatgaataaacaaga |
27644227 |
T |
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| Q |
367 |
accaccaacgcactaaaaccaaaaacaaactcaaattgtattattagggcaaaggtaacatttgtaatttcaattcataatttcaacaatgggg--acaa |
464 |
Q |
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| T |
27644228 |
accaccaacgcactaaaaccacaaacaaactcaaattgtattattagggcaaaggtaacatttgtaatttcaattcatgatttcaacattggggaaaaaa |
27644327 |
T |
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| Q |
465 |
aaccctaattctgtttc |
481 |
Q |
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| T |
27644328 |
aaccctaattatgtttc |
27644344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 27643943 - 27644130
Alignment:
| Q |
10 |
gcagagatgttgttgttgtcgcaatgttgctgttataatatcctcgcaacattgcagcgcgattttcaatcatgtgtacagccggattgtgaccaaatca |
109 |
Q |
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| T |
27643943 |
gcagagatgttgttcttgtcgcaatgttgctgttataatatcctcgcaacattgcagtgtgattttcaatcatgcgtacaaccggattgtgaccaaatca |
27644042 |
T |
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| Q |
110 |
tgaaccacatcagaggatttcagccattttggttcaaatcttcacactattaaactgtaatgagcgcaatcacatccgtgaccgcaat |
197 |
Q |
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| T |
27644043 |
tgaaccacatcagaggatttcagccattttggttcaaatcttcacactattaaactgtaatgagcacaatcacatctgtgaccgcaat |
27644130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 346 - 481
Target Start/End: Original strand, 27548728 - 27548864
Alignment:
| Q |
346 |
aagtattatgaataaacaagaaccaccaacgcactaaaaccaaaaacaaactcaaattgtattattagggcaaaggtaacatttgtaatttcaattcata |
445 |
Q |
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| T |
27548728 |
aagtattatgaataaacaagaaccaccaacgcactaaaactaaaaacaaacccaaattgtattattagggcaaaggtaacatttgtaatttcaattcata |
27548827 |
T |
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| Q |
446 |
atttcaacaatgggg-acaaaaccctaattctgtttc |
481 |
Q |
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| T |
27548828 |
atttcaacattggggaaaaaaaccataattctgtttc |
27548864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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