View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18278_low_22 (Length: 452)
Name: NF18278_low_22
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Complemental strand, 18844502 - 18844084
Alignment:
| Q |
16 |
ataggtgcaacccaacaaactcacgtacattaccattagaggcaccatcaatattacatttaacctaattgaaaatagggggttgccaaataacttcttt |
115 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
18844502 |
ataggtgcaacccaacgaactcatgtacattaccattagaggcaccatcaatattacatttaacctaattgaaaatagggggttgtcaaataactccttt |
18844403 |
T |
|
| Q |
116 |
aattctaggagcattcctataagtgatttgaactgagaaagcttttaagataacaaaatttgtaatggaagaatttccaaccagcttagaatgattacca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18844402 |
aattctaggagcattcctataagtgatttgaactgagaaagcttttaagataacaaactttgtaatggaagaatttccaacaagcttagaatgattacca |
18844303 |
T |
|
| Q |
216 |
catagagtagtatttgtgatgataaggttgattgttgatctgtgattgatcttcttatcaacaaacctgacttgatttctacaaaaccaaataattttga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
18844302 |
catagagtagtatttgtgatgataaggttgtttgttgatctgtgattgatcttcttatcaacaaacctgacttgatttctacaaaactaaataatgttga |
18844203 |
T |
|
| Q |
316 |
aacagttgatgacatcagccaaaattaccagcttacacttaggagaccaatttttcttacataaatccagtgcttcagagattgaggaaaaattacaagg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
18844202 |
aacagttgatgacatcagccaaaattaccagcttacacttaggagaccaatttttcttacataaatctagtgcttcagagattgaagaaaaattacaagg |
18844103 |
T |
|
| Q |
416 |
agtacttagtagggagcct |
434 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
18844102 |
agtacttggtagggagcct |
18844084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 30880972 - 30881100
Alignment:
| Q |
44 |
attaccattagaggcaccatcaatattacatttaacctaattgaaaatagggggttgccaaataacttctttaattctaggagcattcctataagtgatt |
143 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| ||||||| | |||| |||||| | ||||||||||||||| | ||| ||||| || || |
|
|
| T |
30880972 |
attaccattggaagcaccatcaatattacatttaacccaattgaagaatggggtttgccatgtgacttctttaattctatgggcagatctataggtcatc |
30881071 |
T |
|
| Q |
144 |
tgaactgagaaagcttttaagataacaaa |
172 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
30881072 |
tgaactgagaaagcttttagaataacaaa |
30881100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 159
Target Start/End: Complemental strand, 45404933 - 45404829
Alignment:
| Q |
55 |
aggcaccatcaatattacatttaacctaattgaaaatagggggttgccaaataacttctttaattctaggagcattcctataagtgatttgaactgagaa |
154 |
Q |
| |
|
|||| |||||||||||||| || | | || |||| || ||||| ||||||||||| || ||||||||||| ||||| | |||| | |||| |||||||| |
|
|
| T |
45404933 |
aggctccatcaatattacacttgatccaaatgaacattgggggctgccaaataacctccttaattctaggtgcatttccataattaattttgactgagaa |
45404834 |
T |
|
| Q |
155 |
agctt |
159 |
Q |
| |
|
||||| |
|
|
| T |
45404833 |
agctt |
45404829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University