View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_23 (Length: 439)
Name: NF18278_low_23
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 62 - 423
Target Start/End: Complemental strand, 38296217 - 38295857
Alignment:
| Q |
62 |
tatgtataataactctttctttttaggcagctaaatatgaaaacaatttcatagtaaaagaaattttctttttgaaggaaatttcaccgtaaaagaataa |
161 |
Q |
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| T |
38296217 |
tatgtatcataactctttctttttaggcagctaaatatgaaaacaatttg---gtaaaagaaattttctttttgaaggaaatttcaccgtaaaagaataa |
38296121 |
T |
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| Q |
162 |
aattaagaaaagaatttcaatgttttttcctccatgttcatgaatgtgacgaattattccaaatgggaacaaaaaagcacttcaatt--aaatatttaat |
259 |
Q |
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| T |
38296120 |
aattaagaaaagaatatcaatgttttttcctccatgttcatgaatgtgacgaattattccaaatgggaacaaaaaagcacttcaattaaaaatatttaat |
38296021 |
T |
|
| Q |
260 |
atcttannnnnnnnggaagaaatatttaatatcttattattttagatgatttttacacagactttctgaatacctaacattcaattcgtaagacttatta |
359 |
Q |
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| T |
38296020 |
atcttattttttttggaagaaatatttaatatcttattattttagatgattttgacacagactttctgaatacctaacattcaattcgtaagacttatta |
38295921 |
T |
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| Q |
360 |
ttttcaatagccattaagggaaaaggaaactgaagaatatataattaattttccaagcatatat |
423 |
Q |
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| T |
38295920 |
ttttcaatagccattaagggaaaaggaaactgaagaatatataattaattttccaagcatatat |
38295857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 38296297 - 38296235
Alignment:
| Q |
2 |
tgtgcttgtgttgaatccacgtagccacgtgtctgatttttgtgtgtgtatcaaggggtgtat |
64 |
Q |
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| T |
38296297 |
tgtgcttgtgttggatccacgtagctacgtgtctgatttttgtgtgggtattaagaggtgtat |
38296235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 264
Target Start/End: Complemental strand, 38303352 - 38303226
Alignment:
| Q |
141 |
aatttcaccgtaaaagaa-taaaattaagaaaagaatttcaatgttttttcctccatgttcatgaatgtgacgaattattccaaatggga-acaaaaaag |
238 |
Q |
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|||||||| ||||||||| |||||||||||||| ||||| | || ||||||||||||||||||||| | |||||||||||||||| | | |||||| |
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| T |
38303352 |
aatttcacagtaaaagaaataaaattaagaaaacaattttagtgatttttcctccatgttcatgaacctcttgaattattccaaatggtagaaaaaaaat |
38303253 |
T |
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| Q |
239 |
cacttcaatt-aaatatttaatatctt |
264 |
Q |
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| T |
38303252 |
tacatcaattaaaatatttaatatctt |
38303226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 38303382 - 38303333
Alignment:
| Q |
76 |
ctttctttttaggcagctaaatatgaaaacaatttcatagtaaaagaaat |
125 |
Q |
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| T |
38303382 |
ctttctttttaggcttataaataagaaaacaatttcacagtaaaagaaat |
38303333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 44454073 - 44454019
Alignment:
| Q |
2 |
tgtgcttgtgttgaatccacgtagccacgtgtctgatttttgtgtgtgtatcaag |
56 |
Q |
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| T |
44454073 |
tgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaag |
44454019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 50526178 - 50526239
Alignment:
| Q |
3 |
gtgcttgtgttgaatccacgtagccacgtgtctgatttttgtgtgtgtatcaaggggtgtat |
64 |
Q |
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| T |
50526178 |
gtgcttgtgcggaatccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtat |
50526239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 27744329 - 27744392
Alignment:
| Q |
16 |
atccacgtagccacgtgtctgatttttgtgtgtgtatcaaggggtg--tatgtataataactct |
77 |
Q |
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|||||||| ||||| |||| |||||||||||| ||||||| ||||| ||||||| |||||||| |
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| T |
27744329 |
atccacgtggccacatgtcagatttttgtgtgggtatcaaagggtgtctatgtatcataactct |
27744392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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