View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18278_low_24 (Length: 437)

Name: NF18278_low_24
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18278_low_24
NF18278_low_24
[»] chr7 (9 HSPs)
chr7 (16-308)||(42853316-42853608)
chr7 (19-262)||(42861003-42861246)
chr7 (309-437)||(42853098-42853226)
chr7 (166-262)||(42856926-42857022)
chr7 (311-427)||(42848454-42848570)
chr7 (311-427)||(42854999-42855115)
chr7 (311-427)||(42860713-42860830)
chr7 (311-427)||(42856636-42856753)
chr7 (166-262)||(42855333-42855429)
[»] chr4 (2 HSPs)
chr4 (23-262)||(27509-27748)
chr4 (312-376)||(27286-27350)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 42853608 - 42853316
Alignment:
Q  16 atgacacccactggaagaaatcatcgaggcgtctgtagaagatgcaaccgccatgcttgaatttgaaccatgcgacataccaggggttgatgtcattgta 115  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42853608 atgacacccactggaaaaaatcatcgaggcgtctgtagaagatgcaaccgccatgcttgaatttgaaccatgcgacataccaggggttgatgtcattgta 42853509  T
Q  116 cacataggagaagagctaacaagctggggattctgtttgttgtgattacacatagctgcttgtcggaggaaattagttaaacgactctgtagtgtatcca 215  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42853508 cacatgggagaagagctaacaagctggggattctgtttgttgtgattacacatagctgcttgtcggaggaaattagttaaacgactctgtagtgtatcca 42853409  T
Q  216 agttcatgtagtcctcctaaaagacgagtccaaaacattgtcaacactcaacagaatatagtctttgaaatttacttctagaatcatacatct 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42853408 agttcatgtagtcctcctaaaagacgagtccaaaacattgtcaacactcaacagaatatagtctttgaaatttacttctagaatcatacatct 42853316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 42861246 - 42861003
Alignment:
Q  19 acacccactggaagaaatcatcgaggcgtctgtagaagatgcaaccgccatgcttgaatttgaaccatgcgacataccaggggttgatgtcattgtacac 118  Q
    ||||||||||||||||||||| ||||||||| |||||| |||||| ||||||||||| |||| ||||| ||||||||||||||||| | ||||||||| |    
T  42861246 acacccactggaagaaatcattgaggcgtctatagaaggtgcaactgccatgcttgagtttggaccatacgacataccaggggttggtatcattgtaccc 42861147  T
Q  119 ataggagaagagctaacaagctggggattctgtttgttgtgattacacatagctgcttgtcggaggaaattagttaaacgactctgtagtgtatccaagt 218  Q
    || |||||||||||||||||||| |||  ||||||||||||||||  ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||    
T  42861146 atcggagaagagctaacaagctgaggagactgtttgttgtgattatgcatagttgcttgtcggaggaaattagataaacgactctctagtgtatccaagt 42861047  T
Q  219 tcatgtagtcctcctaaaagacgagtccaaaacattgtcaacac 262  Q
    |||||||||| ||||||||||| |||| ||||||||||||||||    
T  42861046 tcatgtagtcatcctaaaagacaagtcgaaaacattgtcaacac 42861003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 309 - 437
Target Start/End: Complemental strand, 42853226 - 42853098
Alignment:
Q  309 atcttttaacaggccctcctccaggcgttttgaaagatccttgatcctccttttctgcatttcactaactggtattgcatgccgttgcaataacatctca 408  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42853226 atcttttaacaggccctcctccaggcattttgaaagatccttgatcctccttttctgcatttcactaactggtattgcatgccgttgcaataacatctca 42853127  T
Q  409 tagctggaaggtaaaatgttattgctgtc 437  Q
    |||||||||||||||||||||||||||||    
T  42853126 tagctggaaggtaaaatgttattgctgtc 42853098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 42857022 - 42856926
Alignment:
Q  166 catagctgcttgtcggaggaaattagttaaacgactctgtagtgtatccaagttcatgtagtcctcctaaaagacgagtccaaaacattgtcaacac 262  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||    
T  42857022 catagttgcttgtcggaggaaattagataaacgactctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtcaacac 42856926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 427
Target Start/End: Complemental strand, 42848570 - 42848454
Alignment:
Q  311 cttttaacaggccctcctccaggcgttttgaaagatccttgatcctccttttctgcatttcactaactgg-tattgcatgccgttgcaataacatctcat 409  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||| ||  ||| | ||| |||| |||||| ||| ||| ||     
T  42848570 cttttaacatgccctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttg-atgcagttgcattaagatcacaa 42848472  T
Q  410 agctggaaggtaaaatgt 427  Q
    ||||||||||||||||||    
T  42848471 agctggaaggtaaaatgt 42848454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 311 - 427
Target Start/End: Complemental strand, 42855115 - 42854999
Alignment:
Q  311 cttttaacaggccctcctccaggcgttttgaaagatccttgatcctccttttctgcatttcactaactgg-tattgcatgccgttgcaataacatctcat 409  Q
    ||||||||| ||||||||||| | |||||||||||| ||| ||||||||||||||||||||| ||| ||| |  || ||||||||||| ||| ||| ||     
T  42855115 cttttaacatgccctcctccaagtgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctg-atgccgttgcattaagatcacaa 42855017  T
Q  410 agctggaaggtaaaatgt 427  Q
    ||||||||| ||||||||    
T  42855016 agctggaagttaaaatgt 42854999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 427
Target Start/End: Complemental strand, 42860830 - 42860713
Alignment:
Q  311 cttttaacaggccctcctccaggcgttttgaaagatccttgatcctccttttctgcatttcactaactgg-tattgcatgccgttgcaataacatctcat 409  Q
    |||| ||||||||||| ||||||||||||||||||||  | ||||||| ||||||||||||| ||| ||| | ||| ||||||||||| ||| ||| ||     
T  42860830 ctttgaacaggccctcgtccaggcgttttgaaagatctgtaatcctccctttctgcatttcagtaattggctgttg-atgccgttgcattaagatcacaa 42860732  T
Q  410 agctgg-aaggtaaaatgt 427  Q
    |||||| ||||||||||||    
T  42860731 agctggaaaggtaaaatgt 42860713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 311 - 427
Target Start/End: Complemental strand, 42856753 - 42856636
Alignment:
Q  311 cttttaacaggccctcctccaggcgttttgaaagatccttgatcctccttttctgcatttcactaactgg-tattgcatgccgttgcaataacatctcat 409  Q
    |||| ||||||||||| ||||||||||||||||||||  | ||| ||| ||||||||||||| ||| ||| | ||| ||||||||||| ||| ||| ||     
T  42856753 ctttgaacaggccctcatccaggcgttttgaaagatctgtaatcttccctttctgcatttcagtaattggctgttg-atgccgttgcattaagatcacaa 42856655  T
Q  410 agctgg-aaggtaaaatgt 427  Q
    |||||| ||||||||||||    
T  42856654 agctggaaaggtaaaatgt 42856636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 42855429 - 42855333
Alignment:
Q  166 catagctgcttgtcggaggaaattagttaaacgactctgtagtgtatccaagttcatgtagtcctcctaaaagacgagtccaaaacattgtcaacac 262  Q
    ||||| |||| ||||||||||| | | |||| |||||| |||||||  |||| |||||||||||| ||| || ||||||| |||||||  |||||||    
T  42855429 catagttgctcgtcggaggaaaatggataaatgactctctagtgtacgcaagctcatgtagtccttctacaatacgagtcgaaaacatgttcaacac 42855333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 23 - 262
Target Start/End: Complemental strand, 27748 - 27509
Alignment:
Q  23 ccactggaagaaatcatcgaggcgtctgtagaagatgcaaccgccatgcttgaatttgaaccatgcgacataccaggggttgatgtcattgtacacatag 122  Q
    ||||||||||||||||| ||||| ||| |||||||||||||  ||| | ||||||||| |||||||||||||||||||||||   |||||||||  ||||    
T  27748 ccactggaagaaatcattgaggcatctatagaagatgcaacaaccacgtttgaatttggaccatgcgacataccaggggttggaatcattgtaccaatag 27649  T
Q  123 gagaagagctaacaagctggggattctgtttgttgtgattacacatagctgcttgtcggaggaaattagttaaacgactctgtagtgtatccaagttcat 222  Q
    |||| ||||||||||||||||||| ||||| | || |||||  ||||| ||||||||||||||||  || |||||||  || |||||| |||||||||||    
T  27648 gagacgagctaacaagctggggatactgttggctgcgattattcatagttgcttgtcggaggaaaagagataaacgagcctctagtgtttccaagttcat 27549  T
Q  223 gtagtcctcctaaaagacgagtccaaaacattgtcaacac 262  Q
    ||| |||||||||||||| |||| ||||||||||||||||    
T  27548 gtactcctcctaaaagacaagtcgaaaacattgtcaacac 27509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 27350 - 27286
Alignment:
Q  312 ttttaacaggccctcctccaggcgttttgaaagatccttgatcctccttttctgcatttcactaa 376  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||    
T  27350 ttttaacatgccctcctccaggcgttttgcaagatccttaatcctccttttttgaatttcactaa 27286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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