View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_25 (Length: 412)
Name: NF18278_low_25
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 1329452 - 1329041
Alignment:
| Q |
1 |
cgacaaattccaatattcttggaccatccatagaagaggtctagctcatcaaactgttttccaatacgacagaaaatgtcatacaccttgatacagtctg |
100 |
Q |
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| T |
1329452 |
cgacaaattccaatattcttggaccatccatagaagaggtctagctcatcaaactgttttccaatacgacagaaaatgtcatacaccttgatacagtctg |
1329353 |
T |
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| Q |
101 |
cgacatccatgtcaggaaaacggtcgattaagatgctcaatatttctgatatgtcgtaatatgattgaaaactctccttcacaattggataaagagccac |
200 |
Q |
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| T |
1329352 |
cgacatccatgtcagaaaaacggtcgattaagatgctcaatatttctgatatgtcgtaatatgattgaaaactctccttcacaattggataaagagccac |
1329253 |
T |
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| Q |
201 |
tatcacaattctatggttctttgctgtccctgttgcattgaaacagatagccatgagaatgctttgtatacatgtgtagtgtaatgtgaatatatcatat |
300 |
Q |
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| T |
1329252 |
tatcacaattctatggctctttgctgttcctgttgcattgaaacagatagccatgagaatgctttgtatacatgtgtaatgtaatgtgaatatatcatat |
1329153 |
T |
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| Q |
301 |
ggtatgcatacttagatatatttgattgcaaaaaggtgtttgataagaaaaaactagataaaatctaataatatataaagcaaattgaatggaaggataa |
400 |
Q |
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| T |
1329152 |
ggtatgcatacttagatatatttgattgcaaaaaggtgtttgataagaaaaaactagataaaatctaataatatataaagcaaattgaatggaaggataa |
1329053 |
T |
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| Q |
401 |
gtattttgttat |
412 |
Q |
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| T |
1329052 |
gtattttgttat |
1329041 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 1924897 - 1924822
Alignment:
| Q |
159 |
atatgattgaaaactctccttcacaattggataaagagccactatcacaattctatggttctttgctgtccctgtt |
234 |
Q |
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| T |
1924897 |
atatgtttgaaaactctccttcacaattgggtagagtgccactatcaccattctatgtgtctttgctctacctgtt |
1924822 |
T |
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