View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18278_low_3 (Length: 796)

Name: NF18278_low_3
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18278_low_3
NF18278_low_3
[»] chr5 (12 HSPs)
chr5 (11-644)||(36202733-36203358)
chr5 (336-514)||(29006218-29006398)
chr5 (324-443)||(9851621-9851740)
chr5 (653-776)||(36202523-36202648)
chr5 (354-510)||(11042983-11043139)
chr5 (24-81)||(2022648-2022705)
chr5 (26-142)||(9851275-9851381)
chr5 (170-324)||(29006447-29006603)
chr5 (18-81)||(43378120-43378183)
chr5 (373-430)||(15205199-15205256)
chr5 (59-147)||(29006660-29006747)
chr5 (333-366)||(28270773-28270806)
[»] chr8 (7 HSPs)
chr8 (323-512)||(28696261-28696450)
chr8 (344-518)||(12729135-12729309)
chr8 (176-333)||(12729344-12729502)
chr8 (30-172)||(44729228-44729364)
chr8 (92-172)||(12729541-12729621)
chr8 (12-57)||(12729637-12729683)
chr8 (24-81)||(25953617-25953674)
[»] chr3 (14 HSPs)
chr3 (324-513)||(52653523-52653712)
chr3 (165-332)||(52653728-52653896)
chr3 (373-513)||(50914636-50914776)
chr3 (172-334)||(33709782-33709945)
chr3 (324-510)||(33709572-33709752)
chr3 (175-333)||(40574317-40574477)
chr3 (12-172)||(52653924-52654075)
chr3 (349-444)||(16729628-16729721)
chr3 (222-334)||(31362294-31362407)
chr3 (446-512)||(2257455-2257521)
chr3 (466-515)||(23686022-23686071)
chr3 (466-515)||(24058259-24058308)
chr3 (19-73)||(16729926-16729980)
chr3 (12-172)||(33709981-33710129)
[»] chr4 (19 HSPs)
chr4 (323-513)||(24129520-24129710)
chr4 (346-512)||(20251147-20251312)
chr4 (323-507)||(48780039-48780222)
chr4 (332-483)||(1494959-1495110)
chr4 (340-479)||(1516526-1516664)
chr4 (419-512)||(122829-122922)
chr4 (24-81)||(3415610-3415667)
chr4 (13-73)||(3425166-3425227)
chr4 (19-81)||(18670524-18670587)
chr4 (175-288)||(20251408-20251523)
chr4 (348-422)||(1533060-1533134)
chr4 (24-81)||(18736848-18736905)
chr4 (80-145)||(48779734-48779799)
chr4 (12-76)||(20251646-20251710)
chr4 (436-483)||(1533134-1533180)
chr4 (22-81)||(30020308-30020367)
chr4 (170-291)||(24391830-24391951)
chr4 (22-72)||(47071118-47071168)
chr4 (24-81)||(18716175-18716232)
[»] chr2 (8 HSPs)
chr2 (340-515)||(34681294-34681469)
chr2 (334-493)||(14219075-14219233)
chr2 (18-76)||(42779878-42779936)
chr2 (23-76)||(16272130-16272183)
chr2 (227-327)||(14218942-14219043)
chr2 (117-148)||(30283756-30283787)
chr2 (18-76)||(716045-716102)
chr2 (335-381)||(14891601-14891647)
[»] chr7 (12 HSPs)
chr7 (332-507)||(12239809-12239983)
chr7 (325-519)||(1840394-1840589)
chr7 (176-329)||(12239628-12239782)
chr7 (227-494)||(24870206-24870478)
chr7 (80-148)||(12239497-12239565)
chr7 (12-73)||(37469116-37469178)
chr7 (33-81)||(5436988-5437036)
chr7 (404-484)||(34091727-34091806)
chr7 (394-457)||(24533212-24533275)
chr7 (251-334)||(24871385-24871468)
chr7 (123-172)||(24870567-24870616)
chr7 (12-77)||(24870652-24870718)
[»] chr6 (5 HSPs)
chr6 (324-510)||(28612324-28612508)
chr6 (170-327)||(28612144-28612303)
chr6 (12-72)||(24075623-24075684)
chr6 (30-81)||(28611983-28612034)
chr6 (89-172)||(11932104-11932187)
[»] chr1 (17 HSPs)
chr1 (176-334)||(49053745-49053905)
chr1 (170-334)||(49061325-49061491)
chr1 (340-513)||(49053554-49053713)
chr1 (336-442)||(17458239-17458345)
chr1 (452-514)||(49061133-49061195)
chr1 (335-497)||(50059269-50059430)
chr1 (80-172)||(49053944-49054036)
chr1 (24-76)||(44524481-44524533)
chr1 (12-172)||(49061524-49061674)
chr1 (24-81)||(21432123-21432180)
chr1 (33-81)||(48366509-48366557)
chr1 (324-381)||(10917415-10917470)
chr1 (24-76)||(10187039-10187091)
chr1 (33-81)||(29681289-29681337)
chr1 (12-67)||(35624693-35624749)
chr1 (324-371)||(52282180-52282226)
chr1 (340-422)||(49061211-49061293)
[»] scaffold0007 (3 HSPs)
scaffold0007 (323-514)||(217508-217689)
scaffold0007 (335-507)||(215646-215816)
scaffold0007 (176-327)||(217708-217861)


Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 11 - 644
Target Start/End: Complemental strand, 36203358 - 36202733
Alignment:
Q  11 cagaacctgtgttggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtgatgaattgtgcacataaattccatggcgt 110  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||          |||||||||| ||||||||    
T  36203358 cagaacctatgttggggtctgctgtaataacttcatcaagaagatgatgaagatgaacataatgaattgtg----------cacataaatttcatggcgt 36203269  T
Q  111 gtgtgggccacactaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaatagaatccttgacgtgacttgcacgttcacatcaagt 209  Q
    ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36203268 gtgtgggccacactaacctttaagttcgattcgtcccc-accagttatgccaaccggatgcaatagaatccttgacgtgacttgcacgttcacatcaagt 36203170  T
Q  210 gtatcgacaacggtagcttacaaaataaagttctgacaa-ttctctcgtacactaaagaagagaacgaataatttagtataattttcggcagaatttaga 308  Q
    |||||  ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36203169 gtatctgcaatggtagcttacaaaataaagttctgacaaattctctcgtacactaaagaagagaacgaataatttagtataattttcggcagaatttaga 36203070  T
Q  309 ctcacagcaatgtgattttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcat 408  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  36203069 ctcacaccaatgtgattttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcat 36202970  T
Q  409 gaatgattacattgattcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctct 508  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  36202969 gaatggttacattgattcaattgtcaagcattacaccttttctctaaaaggtctctttttaaccattgcaacttttcaaatatattttaaaaatttctct 36202870  T
Q  509 cacaattaatacaccaatgttcatgtgtctgtttgtacaattttcttatgcgttcaattgcatataaaggagat-tcatttctgtgttgccaagaacaaa 607  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  36202869 cacaattaatacaccaatgttcatgtgtctggttgtacgattttcttatgtgttcaattgtatataaaggagatgtcatttctgtgttgccaagaacaaa 36202770  T
Q  608 cggctaaaaagatgatatcaactttgtcgcgagtata 644  Q
    ||||||||||||||||| ||||||||| || ||||||    
T  36202769 cggctaaaaagatgataacaactttgtggcaagtata 36202733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 336 - 514
Target Start/End: Complemental strand, 29006398 - 29006218
Alignment:
Q  336 aaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaa 435  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||  |||||||| |||||||||||||| |||||||| |||||| || ||    
T  29006398 aaagtgtctctatttatagagaaacttatgtcatttggtgaagggaaacaaccctttaaaagattttgttcatgaatggttacattgcttcaatcgtaaa 29006299  T
Q  436 gcattacact---ttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 514  Q
     |||||||||   |||| |||||||| |||| ||||||  |||||||||||| || ||||||||| ||||||||||||||||    
T  29006298 acattacacttttttttttctaaaagatctc-ttttaattattgcaacttttcaattatattttggaaatttctctcacaat 29006218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 324 - 443
Target Start/End: Original strand, 9851621 - 9851740
Alignment:
Q  324 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattga 423  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||  || | |||||||||| ||||||| | | ||||     
T  9851621 ttttctgcctccaaaatgtctctatttacagagaaacttatgtcttttggtgaagagaaataaccatttgacagagtttgtttatgaatggtcagattgc 9851720  T
Q  424 ttcaattgtcaagcattaca 443  Q
    ||||||||||||||| ||||    
T  9851721 ttcaattgtcaagcaataca 9851740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 653 - 776
Target Start/End: Complemental strand, 36202648 - 36202523
Alignment:
Q  653 gtagcacttcttatatgagagaagtagagttgtttgattatataattctattttatcttctt--nnnnnnnnnnnnnntcactaaaaccaaaaacagatg 750  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||                ||| ||||||||||||||||||    
T  36202648 gtagcacttcttatatgagagaagtagagttgtttggttatataattccattttatcttcttaaaaaaaaaaaaaaaatcagtaaaaccaaaaacagatg 36202549  T
Q  751 aatctaaaagcatcaaattagaacat 776  Q
    ||||||||||||||||||||||||||    
T  36202548 aatctaaaagcatcaaattagaacat 36202523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 354 - 510
Target Start/End: Original strand, 11042983 - 11043139
Alignment:
Q  354 gagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcattacactttttctct 453  Q
    |||||||| ||||| ||||||| ||| ||  ||||  || ||||||||||||||||||||  || ||||||| ||| | ||| |||||||| ||||||||    
T  11042983 gagaaactcatgtcctttggtgtagataatcaaccctttgaaagagtttgttcatgaatggctagattgattaaatggacaaacattacaccttttctct 11043082  T
Q  454 aaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctca 510  Q
    ||||| ||| | |||||||  || ||||||| |||||||||||||||||||| ||||    
T  11043083 aaaagatctttatttaaccgatgaaacttttcaaatatattttgaaaatttcactca 11043139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 2022648 - 2022705
Alignment:
Q  24 ggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtg 81  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  2022648 ggggtctgctgcaataacttgatcaagaagatgatgaagatgaacatgatgaaatgtg 2022705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 9851275 - 9851381
Alignment:
Q  26 ggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtgatgaattgtgcacataaattccatggcgtgtgtgggccacacta 125  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||          |||||||||||||||||||||||||  ||||||||||| |||||||    
T  9851275 ggtctgctgcaataacttgatcaaaaagatgatgaagatgaaca----------tgatgaattgtgcacataaattccaaagcgtgtgtgggacacacta 9851364  T
Q  126 acctttaagttcgattc 142  Q
    || |||| |||| ||||    
T  9851365 acatttaggttcaattc 9851381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 170 - 324
Target Start/End: Complemental strand, 29006603 - 29006447
Alignment:
Q  170 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagctt-acaaaataaagttctgacaa-ttctctcgtacactaaaga 267  Q
    |||| ||||||||||| |||| | ||| |||||| |||| |||||| ||| | ||| || ||| |||||||||||| ||| || |||||| ||||| | |    
T  29006603 caatggaatccttgacatgacatacacattcacaccaagcgtatcgtcaatgttagttttacagaataaagttctgtcaacttatctcgtgcactagaaa 29006504  T
Q  268 agagaacgaataatttagtataattttcggcagaatttagactcacagcaatgtgat 324  Q
    | |||| |||| |||||||||||||||  ||||||||||||||||||  ||||||||    
T  29006503 aaagaatgaatgatttagtataatttttagcagaatttagactcacaagaatgtgat 29006447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 43378120 - 43378183
Alignment:
Q  18 tgtgttggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtg 81  Q
    |||||||||||||||||||||||||| | || ||||||||| |||||||| |||||||| ||||    
T  43378120 tgtgttggggtctgctgcaataacttgaccatgaagatgatgaagatgaatatgatgaagtgtg 43378183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 430
Target Start/End: Complemental strand, 15205256 - 15205199
Alignment:
Q  373 gtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaatt 430  Q
    ||||| ||||||||||  ||  |||||||||||||||||||||||||||| |||||||    
T  15205256 gtgaatagaaataaccatttgtaagagtttgttcatgaatgattacattgcttcaatt 15205199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 29006747 - 29006660
Alignment:
Q  59 aaagatgaacatgatgaattgtgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgcccc 147  Q
    |||||||| || |||||||  |||||||  ||||||||||||| ||  ||||||||| | ||||||||| |||| ||||||||||||||    
T  29006747 aaagatgatcaagatgaata-tgatgaagagtgcacataaatttcaaagcgtgtgtgagacacactaacttttaggttcgattcgcccc 29006660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 28270773 - 28270806
Alignment:
Q  333 tccaaagtgtctctatttatagagaaacttatgt 366  Q
    |||||||| |||||||||||||||||||||||||    
T  28270773 tccaaagtatctctatttatagagaaacttatgt 28270806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 7e-48; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 323 - 512
Target Start/End: Original strand, 28696261 - 28696450
Alignment:
Q  323 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 422  Q
    ||||||||  |||||||||||||||||||| |||||||||||||  ||||||||||||||| | ||  ||| ||||||||||||||||||| ||||||||    
T  28696261 attttctgcatccaaagtgtctctatttatggagaaacttatgttctttggtgaagagaaacatccctttagaagagtttgttcatgaatggttacattg 28696360  T
Q  423 attcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 512  Q
     ||||||||| ||||||||||| ||||||||||||| ||||| |||| ||||||||||||||   | ||||||| |||||| ||||||||    
T  28696361 cttcaattgttaagcattacacattttctctaaaagatctctatttacccattgcaactttttcgaaatattttaaaaattactctcaca 28696450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 344 - 518
Target Start/End: Complemental strand, 12729309 - 12729135
Alignment:
Q  344 tctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcattaca 443  Q
    |||||||| ||||||| ||||||| | ||||||||||||| |||   ||| ||||||||| ||||||||| ||| |||| |||||||||| |||||||||    
T  12729309 tctatttacagagaaatttatgtcctgtggtgaagagaaacaactctttagaagagtttgctcatgaatggttatattgcttcaattgtcgagcattaca 12729210  T
Q  444 ctttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaattaat 518  Q
    | ||||||||||||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||| ||||    
T  12729209 ccttttctctaaaaggtctctatttaaccattgcaactttccaaatatattttggaaatttctctcacaaataat 12729135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 176 - 333
Target Start/End: Complemental strand, 12729502 - 12729344
Alignment:
Q  176 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagcttacaaaataaagttctgacaatt-ctctcgtacactaaagaagagaac 274  Q
    |||||||||| |||||||||| |||||| ||||  |||||||||  |||| ||||  |||||||||||| ||||| ||||||| ||||| |||| ||||     
T  12729502 aatccttgacatgacttgcacattcacaccaagcatatcgacaattgtagtttactgaataaagttctgtcaatttctctcgtgcactagagaaaagaaa 12729403  T
Q  275 gaataatttagtataattttcggcagaatttagactcacagcaatgtgattttctgtct 333  Q
    |||| |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  12729402 gaattatttagtataattttcggcagaattttgacacacaacaatgtgattttctgtct 12729344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 44729364 - 44729228
Alignment:
Q  30 tgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacct 129  Q
    |||| ||||||||| ||||||||||| || || ||||||||||       |||||||  ||||||||||||||||  |||||||||||  ||||||||||    
T  44729364 tgctacaataacttgatcaagaagataatgaaaatgaacatgaa------tgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacct 44729271  T
Q  130 ttaagttcgattcgccccccaccattatgccaaccggatgcaa 172  Q
    ||| |||| |||| ||||      |||||||||||||||||||    
T  44729270 ttatgttcaattcacccctgcgagttatgccaaccggatgcaa 44729228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 12729621 - 12729541
Alignment:
Q  92 cacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaa 172  Q
    ||||| |||||||  | ||||||||| |||||||||||||| || ||||||| || |||||| |||||||||||||||||||    
T  12729621 cacatgaattccaaagagtgtgtgggacacactaacctttaggtacgattcg-cctccaccagttatgccaaccggatgcaa 12729541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 12729683 - 12729637
Alignment:
Q  12 agaacctgtgttgggg-tctgctgcaataacttcatcaagaagatga 57  Q
    |||||||||||||||| |||||||||||| ||| |||||||||||||    
T  12729683 agaacctgtgttggggatctgctgcaataccttgatcaagaagatga 12729637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 25953674 - 25953617
Alignment:
Q  24 ggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtg 81  Q
    |||||||| ||||||||||| | ||||||||| || |||||||| |||||||| ||||    
T  25953674 ggggtctgatgcaataacttaaccaagaagataatgaagatgaatatgatgaagtgtg 25953617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 2e-45; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 324 - 513
Target Start/End: Complemental strand, 52653712 - 52653523
Alignment:
Q  324 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattga 423  Q
    ||||||| ||||||||||||| | | ||||||||||||| |||| ||||||||||||| | ||||  ||||||||||||||||||||||| ||||||||     
T  52653712 ttttctgcctccaaagtgtctttgtctatagagaaacttgtgtcctttggtgaagagacacaaccatttaaaagagtttgttcatgaatggttacattgc 52653613  T
Q  424 ttcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 513  Q
     ||||||||||| || ||||| ||||| ||||||||| | | ||||| ||||||||||||  |||||||||||| |||||||||||||||    
T  52653612 atcaattgtcaaacaatacaccttttcactaaaaggtatttatttaatcattgcaactttccaaatatattttggaaatttctctcacaa 52653523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 165 - 332
Target Start/End: Complemental strand, 52653896 - 52653728
Alignment:
Q  165 ggatgcaatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagcttacaaaataaagttctgacaattct-ctcgtacacta 263  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||| ||||| | ||||| |||||    
T  52653896 ggatacaatggaatccttgacgtgacttgcacattcacatcaagtgtatcgacaatggtagtttacagaataaagttctgtcaattttcctcgtgcacta 52653797  T
Q  264 aagaagagaacgaataatttagtataattttcggcagaatttagactcacagcaatgtgattttctgtc 332  Q
     |||| || | |||| |||||||||||||||| |||||||||| ||||||| |||||| ||||||||||    
T  52653796 gagaaaagtaagaatgatttagtataattttcagcagaatttaaactcacaacaatgtaattttctgtc 52653728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 373 - 513
Target Start/End: Original strand, 50914636 - 50914776
Alignment:
Q  373 gtgaagagaaataacctattaaaagagtttgtt-catgaatgattacattgattcaattgtcaagcattacactttttctctaaaaggtctctttttaac 471  Q
    ||||||||||| ||||| ||  ||||||||||| |||||||| || ||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  50914636 gtgaagagaaaaaacct-ttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaac 50914734  T
Q  472 cattgcaacttttgaaatatattttgaaaatttctctcacaa 513  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  50914735 cattgcaacttttcaaatatattttgaaaatttctctaacaa 50914776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 172 - 334
Target Start/End: Complemental strand, 33709945 - 33709782
Alignment:
Q  172 atagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagcttacaaaataaagttctgac-aattctctcgtacactaaagaaga 270  Q
    ||||||||||||||||||||||||| |||||| |||| |||||||||| ||||| ||||| |||||||||||| | |||||||| || ||||| |||| |    
T  33709945 atagaatccttgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttacagaataaagttctgtcaaattctctggtgcactagagaaaa 33709846  T
Q  271 gaacgaataatttagtataattttcggcagaatttagactcacagcaatgtgattttctgtctc 334  Q
    ||| |||| |||||||||||||||||||| |||||||||||||   |||||||| |||| ||||    
T  33709845 gaaagaatgatttagtataattttcggcaaaatttagactcaccagaatgtgatattctatctc 33709782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 324 - 510
Target Start/End: Complemental strand, 33709752 - 33709572
Alignment:
Q  324 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattga 423  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||  || ||||| |||||          ||||||||     
T  33709752 ttttctgcctccaaagtgtctctatttatagagaaacttatgtcctttggtgaagggaaagaaccctttgaaagattttgt----------ttacattgc 33709663  T
Q  424 ttcaattgtcaagcattacac--tttttctctaaaaggtctctttttaaccattgcaacttttgaaata---tattttgaaaatttctctca 510  Q
    ||||||||| |||||||||||  ||||| | ||||||||||| |||||||||||||||||||  |||||   ||||||| ||||||||||||    
T  33709662 ttcaattgtaaagcattacaccttttttttataaaaggtctc-ttttaaccattgcaactttccaaatatattattttggaaatttctctca 33709572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 175 - 333
Target Start/End: Original strand, 40574317 - 40574477
Alignment:
Q  175 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caacggtagcttacaaaataaagttctgacaatt-ctctcgtacactaaagaagaga 272  Q
    ||||| |||||||||||||||| ||||||  ||| ||||| | ||| | ||| ||||| |||||||||||| ||||| ||||||| ||||| |||| |||    
T  40574317 gaatctttgacgtgacttgcacattcacacgaagcgtatcaatcaatgatagtttacagaataaagttctgtcaatttctctcgtgcactagagaaaaga 40574416  T
Q  273 acgaataatttagtataattttcggcagaatttagactcacagcaatgtgattttctgtct 333  Q
    | |||| ||||| ||| |||||||||||||||| ||||||||  ||||||||||| |||||    
T  40574417 aagaatgatttaatattattttcggcagaattttgactcacaagaatgtgattttgtgtct 40574477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 52654075 - 52653924
Alignment:
Q  12 agaacctgtgtt-ggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtgatgaattgtgcacataaattccatggcgt 110  Q
    |||||||||||| ||||| ||| |||||||||| |||||||||||||| || |||||||||||||| ||||          |||||||||||||  ||||    
T  52654075 agaacctgtgtttggggtttgcggcaataacttgatcaagaagatgatgaaaatgaacatgatgaagtgtg----------cacataaattccaaagcgt 52653986  T
Q  111 gtgtgggccacactaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaa 172  Q
    ||||||| |||||||||||||| |||| ||||| ||| ||||| |||||||||||||||||||    
T  52653985 gtgtgggacacactaacctttaggttcaattcg-ccctcaccagttatgccaaccggatgcaa 52653924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 349 - 444
Target Start/End: Complemental strand, 16729721 - 16729628
Alignment:
Q  349 ttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcattacac 444  Q
    ||||||||||| | ||||| ||||||||||||||| ||| | |||||||||||| ||||||||| ||||||||| |||||| |||||| |||||||    
T  16729721 ttatagagaaagt-atgtcttttggtgaagagaaacaac-tcttaaaagagtttcttcatgaattattacattgcttcaatagtcaagtattacac 16729628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 222 - 334
Target Start/End: Original strand, 31362294 - 31362407
Alignment:
Q  222 gtagcttacaaaataaagttctgacaattctc-tcgtacactaaagaagagaacgaataatttagtataattttcggcagaatttagactcacagcaatg 320  Q
    |||| |||||||||||||||||| ||||| || |||| ||||||| || | ||  || |||||||||| ||||||| |||||||| ||||||||  ||||    
T  31362294 gtagtttacaaaataaagttctgtcaattttcctcgtgcactaaaaaaaataaaaaaaaatttagtattattttcgacagaattttgactcacaagaatg 31362393  T
Q  321 tgattttctgtctc 334  Q
    ||||||| ||||||    
T  31362394 tgattttttgtctc 31362407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 446 - 512
Target Start/End: Original strand, 2257455 - 2257521
Alignment:
Q  446 ttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 512  Q
    ||||||||||| ||||||| ||||| ||||||||||||| |||||||||||  |||||||| |||||    
T  2257455 ttttctctaaatggtctctatttaagcattgcaacttttcaaatatatttttgaaatttctatcaca 2257521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 23686071 - 23686022
Alignment:
Q  466 tttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 515  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  23686071 tttaaccattgcaactttccaaatatattttggaaatttctctcacaatt 23686022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 24058308 - 24058259
Alignment:
Q  466 tttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 515  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  24058308 tttaaccattgcaactttccaaatatattttggaaatttctctcacaatt 24058259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 16729980 - 16729926
Alignment:
Q  19 gtgttggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgat 73  Q
    |||| |||||||||||||||||||| ||||| |||| ||| ||||||||||||||    
T  16729980 gtgtcggggtctgctgcaataacttgatcaataagaagatgaagatgaacatgat 16729926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 33710129 - 33709981
Alignment:
Q  12 agaacctgtgttggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtgatgaattgtgcacataaattccatggcgtg 111  Q
    |||||||||||||||||||||||||||| ||| | |||||| ||||||  || |||||||||||| ||||          ||| |||||||||  |||||    
T  33710129 agaacctgtgttggggtctgctgcaatatcttgaccaagaaaatgatat-gaagaacatgatgaagtgtg----------cac-taaattccaaagcgtg 33710042  T
Q  112 tgtgggccacactaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaa 172  Q
    |||||| |||||||||||||| | |||||||  || |||||| ||||| |||||||||||||    
T  33710041 tgtgggacacactaacctttaggatcgattc-acctccaccagttatgtcaaccggatgcaa 33709981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 323 - 513
Target Start/End: Original strand, 24129520 - 24129710
Alignment:
Q  323 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 422  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||||  ||  ||||||||||||||||||| ||||||||    
T  24129520 attttttgcctccagagtgtctctatttatagagaaacttatgtcatttggttaaggaaaataaccatttggaagagtttgttcatgaatggttacattg 24129619  T
Q  423 attcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 513  Q
     ||||||| ||||||| ||||| ||| ||| |||| | || | |||||||||||| |||||  ||||||||||||| ||||||||||||||    
T  24129620 cttcaattatcaagcaatacacctttcctccaaaaagcctatatttaaccattgcgactttctaaatatattttgataatttctctcacaa 24129710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 346 - 512
Target Start/End: Complemental strand, 20251312 - 20251147
Alignment:
Q  346 tatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcattacact 445  Q
    |||||||||||||||||||||| |||||| |||| ||| |||   |||| |||||| ||||||||||  |||||||| ||||||| |||| || ||||||    
T  20251312 tatttatagagaaacttatgtcctttggtaaagaaaaacaactatttaagagagtt-gttcatgaatagttacattgtttcaattatcaaacaatacact 20251214  T
Q  446 ttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 512  Q
    ||||||||||||| ||||| |||||| |||||||||||  ||||||||||| |||||||||||||||    
T  20251213 ttttctctaaaagatctctatttaacaattgcaactttccaaatatattttaaaaatttctctcaca 20251147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 323 - 507
Target Start/End: Original strand, 48780039 - 48780222
Alignment:
Q  323 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 422  Q
    |||||||| ||||||||| ||| |||||||||| ||||| | ||| ||||||| ||||||| ||||| | |||||| ||| |||||||||  ||| ||||    
T  48780039 attttctgcctccaaagtatctttatttatagataaactcaagtcttttggtgtagagaaacaacctttgaaaagaatttattcatgaatagttatattg 48780138  T
Q  423 attcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctc 507  Q
     |||||||||||| ||||| || ||||||||||||| ||| | ||||| ||||||||||||  ||||||||||||||||||||||    
T  48780139 cttcaattgtcaaacattataccttttctctaaaagatct-tgtttaatcattgcaactttccaaatatattttgaaaatttctc 48780222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 332 - 483
Target Start/End: Original strand, 1494959 - 1495110
Alignment:
Q  332 ctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaa-taacctattaaaagagtttgttcatgaatgattacattgattcaatt 430  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||  ||||  ||||| | |||  | |||||||||||||| ||| |||| ||||| |    
T  1494959 ctccaaaatgtctctttttatagagaaacttatgtcatttggtgaacggaaacaaacctttgaaagaattttgttcatgaatggttatattgcttcaact 1495058  T
Q  431 gtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttt 483  Q
    || |||| |||||| ||||||||||| |||||| |||||||||||||||||||    
T  1495059 gtaaagctttacaccttttctctaaatggtctc-ttttaaccattgcaacttt 1495110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 340 - 479
Target Start/End: Original strand, 1516526 - 1516664
Alignment:
Q  340 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcat 439  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||  || ||||| |||||||||||||| ||| ||||  ||| || | |||||     
T  1516526 tgtctctatttctagagaaacttatgtcatttggtgaacggaaataaccctttgaaagattttgttcatgaatggttatattgcgtcatttctaaagcac 1516625  T
Q  440 tacactttttctctaaaaggtctctttttaaccattgcaa 479  Q
    ||||| |||||||||||| ||||| |||||||||||||||    
T  1516626 tacaccttttctctaaaatgtctc-ttttaaccattgcaa 1516664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 419 - 512
Target Start/End: Complemental strand, 122922 - 122829
Alignment:
Q  419 attgattcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 512  Q
    |||| ||||||||||||||| ||||| |||||||||||| || ||| |||||| |||||||||||| ||||||| |||| ||||||||||||||    
T  122922 attgtttcaattgtcaagcaatacacattttctctaaaatgtttctatttaactattgcaacttttcaaatatactttggaaatttctctcaca 122829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 3415667 - 3415610
Alignment:
Q  24 ggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtg 81  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||||||||| ||||    
T  3415667 ggggtctgctgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtg 3415610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 3425227 - 3425166
Alignment:
Q  13 gaacctgtgttgggg-tctgctgcaataacttcatcaagaagatgataaagatgaacatgat 73  Q
    ||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||||||    
T  3425227 gaacctgtgttggggatctgctgcaataacttgaccaagaagatgatgaagatgaacatgat 3425166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 18670524 - 18670587
Alignment:
Q  19 gtgttggg-gtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtg 81  Q
    |||||||| ||||| ||||||||||| | |||||||||||||||||||||||||||||| ||||    
T  18670524 gtgttgggcgtctgttgcaataacttgaccaagaagatgataaagatgaacatgatgaagtgtg 18670587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 175 - 288
Target Start/End: Complemental strand, 20251523 - 20251408
Alignment:
Q  175 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caacggtagcttacaaaataaagttctgacaa-ttctctcgtacactaaagaagaga 272  Q
    ||||| |||| ||| |||| || ||||||||||||||||||| ||| | ||| ||||| |||||||||||| ||| ||||||||| ||||| |||| |||    
T  20251523 gaatcattgatgtgccttgtacattcacatcaagtgtatcgatcaatgatagtttacataataaagttctgtcaatttctctcgtgcactacagaaaaga 20251424  T
Q  273 acgaataatttagtat 288  Q
    |  ||| |||||||||    
T  20251423 aataatgatttagtat 20251408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 348 - 422
Target Start/End: Original strand, 1533060 - 1533134
Alignment:
Q  348 tttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 422  Q
    ||||||||||||||||||||||||| ||||| |||| ||||  || ||||| ||||||||| |||| ||| ||||    
T  1533060 tttatagagaaacttatgtcatttgatgaagggaaacaaccctttgaaagattttgttcataaatggttatattg 1533134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 18736848 - 18736905
Alignment:
Q  24 ggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtg 81  Q
    ||||||||||| ||||||||  ||||||||||||| ||||||||| ||||||| ||||    
T  18736848 ggggtctgctgtaataacttggtcaagaagatgattaagatgaacttgatgaagtgtg 18736905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 48779734 - 48779799
Alignment:
Q  80 tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgcc 145  Q
    ||||||| |||||| ||||||| ||  |||||||||||  ||||||||||||| ||||||||||||    
T  48779734 tgatgaagtgtgcatataaatttcaaagcgtgtgtgggatacactaacctttatgttcgattcgcc 48779799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 20251710 - 20251646
Alignment:
Q  12 agaacctgtgttggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaa 76  Q
    |||| |||||||||||||||||| ||||  || |  ||||||||||| |||||||||||||||||    
T  20251710 agaatctgtgttggggtctgctgtaatagtttgactaagaagatgatgaagatgaacatgatgaa 20251646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 483
Target Start/End: Original strand, 1533134 - 1533180
Alignment:
Q  436 gcattacactttttctctaaaaggtctctttttaaccattgcaacttt 483  Q
    ||||||||| |||||||||| ||||||| |||||||||||||||||||    
T  1533134 gcattacaccttttctctaataggtctc-ttttaaccattgcaacttt 1533180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 30020367 - 30020308
Alignment:
Q  22 ttggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtg 81  Q
    ||||| |||||||||||||||| | |||||||||||| |||||||  |||||||| ||||    
T  30020367 ttgggatctgctgcaataacttgaccaagaagatgatgaagatgactatgatgaagtgtg 30020308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 291
Target Start/End: Complemental strand, 24391951 - 24391830
Alignment:
Q  170 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagcttacaaaataaagttctgacaatt-ctctcgtacactaaagaa 268  Q
    |||| |||||||||  ||||||||||| | |||| |||  |||||||||| | ||| ||||| ||||||||| || ||||| ||||| | ||||| ||||    
T  24391951 caatggaatccttggtgtgacttgcacat-cacaccaaacgtatcgacaatgatagtttacagaataaagttatgtcaatttctctcatgcactagagaa 24391853  T
Q  269 gagaacgaataatttagtataat 291  Q
     |||| |||| ||||||||||||    
T  24391852 aagaaagaatgatttagtataat 24391830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 47071118 - 47071168
Alignment:
Q  22 ttggggtctgctgcaataacttcatcaagaagatgataaagatgaacatga 72  Q
    |||||||||||| ||||||||| |  ||||||||||| |||||||||||||    
T  47071118 ttggggtctgctacaataacttgactaagaagatgatgaagatgaacatga 47071168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 18716175 - 18716232
Alignment:
Q  24 ggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtg 81  Q
    ||||||||||| ||||||||   |||||||||||| ||||||||| ||||||| ||||    
T  18716175 ggggtctgctgtaataacttggccaagaagatgattaagatgaacttgatgaagtgtg 18716232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 7e-42; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 340 - 515
Target Start/End: Original strand, 34681294 - 34681469
Alignment:
Q  340 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcat 439  Q
    |||| ||||||||||||||| ||||||| ||||| ||||| ||| |||   ||  |||||||||||||| |||| | |||||| |||||||||||| |||    
T  34681294 tgtccctatttatagagaaatttatgtcttttggggaagaaaaacaactcttttgaagagtttgttcatcaatggtaacattgcttcaattgtcaaacat 34681393  T
Q  440 tacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 515  Q
    ||||||||||||||||||||| | | ||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  34681394 tacactttttctctaaaaggtttatgtttaaccattgcaacattccaaatatattttgaaaatttctctcacaatt 34681469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 334 - 493
Target Start/End: Original strand, 14219075 - 14219233
Alignment:
Q  334 ccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtc 433  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||   || |||||||| ||||||||  |||||||||| |||||||||     
T  14219075 ccaaagtgtctctatttatagagaaacttatgccatttggtgaagagaaacaacactttgaaagagttggttcatgaccgattacattgcttcaattgta 14219174  T
Q  434 aagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatat 493  Q
    ||||||| ||| |||||||| |||| | ||| |||||| |||||||| ||| ||||||||    
T  14219175 aagcattgcacattttctct-aaagatttctatttaactattgcaacatttcaaatatat 14219233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 42779878 - 42779936
Alignment:
Q  18 tgtgttggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaa 76  Q
    |||||||||||||||||||||||||| | |||||||||||| ||||||||||| |||||    
T  42779878 tgtgttggggtctgctgcaataacttgaccaagaagatgatgaagatgaacataatgaa 42779936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 16272130 - 16272183
Alignment:
Q  23 tggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaa 76  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||||||||||    
T  16272130 tggggtctgctgcaataacttgactaagaagatgataaagatgaacatgatgaa 16272183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 327
Target Start/End: Original strand, 14218942 - 14219043
Alignment:
Q  227 ttacaaaataaagttctgacaattctc-tcgtacactaaagaagagaacgaataatttagtataattttcggcagaatttagactcacagcaatgtgatt 325  Q
    |||||||||||||||||  ||||| || |||| ||||| |||| |||| |||| ||||||||| |||||  ||| ||||| ||||||||  |||||||||    
T  14218942 ttacaaaataaagttctttcaattttcctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtgatt 14219041  T
Q  326 tt 327  Q
    ||    
T  14219042 tt 14219043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 148
Target Start/End: Complemental strand, 30283787 - 30283756
Alignment:
Q  117 gccacactaacctttaagttcgattcgccccc 148  Q
    ||||||||||||||||||||||||||||||||    
T  30283787 gccacactaacctttaagttcgattcgccccc 30283756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 716045 - 716102
Alignment:
Q  18 tgtgttggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaa 76  Q
    ||||||| |||||||||||||||||| | |||||||||||| || ||||| ||||||||    
T  716045 tgtgttgaggtctgctgcaataacttgaccaagaagatgatgaa-atgaatatgatgaa 716102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 14891647 - 14891601
Alignment:
Q  335 caaagtgtctctatttatagagaaacttatgtcatttggtgaagaga 381  Q
    ||||||||||||| ||||||| |||| |||||||||||||| |||||    
T  14891647 caaagtgtctctacttatagaaaaacatatgtcatttggtgcagaga 14891601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 332 - 507
Target Start/End: Original strand, 12239809 - 12239983
Alignment:
Q  332 ctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattg 431  Q
    ||||||||||||| ||||||||||||||||||| || |||| | |||||    ||||  || |||||||||||||||||||| ||||||||  |||||||    
T  12239809 ctccaaagtgtctttatttatagagaaacttatatcctttgatcaagagccgcaaccatttgaaagagtttgttcatgaatggttacattgcatcaattg 12239908  T
Q  432 tcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctc 507  Q
    ||||||| ||||||||||| ||||||||||| | ||||||||||||||| ||| |||||||||||| |||||||||    
T  12239909 tcaagcaatacactttttcactaaaaggtctttctttaaccattgcaac-tttcaaatatattttggaaatttctc 12239983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 325 - 519
Target Start/End: Complemental strand, 1840589 - 1840394
Alignment:
Q  325 tttctgtctccaaagtgtctctatttatagagaaacttatgt-catttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattga 423  Q
    |||||| ||||||| ||||||||||||||||||||||||||| | |||| |||||| | | ||| | ||| |||| |||||||||||||| ||||| |      
T  1840589 tttctgcctccaaaatgtctctatttatagagaaacttatgtccttttgatgaagaaagacaactttttagaagaatttgttcatgaatggttacaatac 1840490  T
Q  424 ttcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaa--tatattttgaaaatttctctcacaattaata 519  Q
    || |||| ||||| |||||||  |||  |||||||||||| | |||||||||||||||||| |||  |||||||| |||||| |||||||||||||||    
T  1840489 ttgaattatcaagaattacaccattt-actaaaaggtctc-tcttaaccattgcaacttttcaaatttatattttaaaaattactctcacaattaata 1840394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 176 - 329
Target Start/End: Original strand, 12239628 - 12239782
Alignment:
Q  176 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagcttacaaaataaagttctgacaa-ttctctcgtacactaaagaagagaac 274  Q
    ||||||||||||||||||||| |||||| |||| |||||||||| ||||| || || ||||||||| || ||| || ||| ||| |||| |||  ||||     
T  12239628 aatccttgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttccagaataaagttttgtcaatttatctagtatactagagataagaaa 12239727  T
Q  275 gaataatttagtataattttcggcagaatttagactcacagcaatgtgattttct 329  Q
    |||||||||| ||| |||||||||||||||   || |||| ||||||||||||||    
T  12239728 gaataatttaatattattttcggcagaattctaacacacaacaatgtgattttct 12239782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 227 - 494
Target Start/End: Complemental strand, 24870478 - 24870206
Alignment:
Q  227 ttacaaaataaagttctgacaattct-ctcgtacactaaagaagagaacgaataatttagtataattttcggcagaatttagactcacagcaatgtga-- 323  Q
    ||||| |||||||||||  ||||| | ||||| ||||| |||| |||| || | ||||||||| ||||| |||||||||| | ||||||  ||| |||      
T  24870478 ttacataataaagttctatcaatttttctcgtgcactagagaaaagaaagacttatttagtattatttttggcagaattttgtctcacaagaatctgaca 24870379  T
Q  324 ---ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacat 420  Q
       |||| || |||||||||||||||||||||||||||| ||||||| |   |||||||||||||||   ||| ||||||||||| || || | ||| |     
T  24870378 ctcttttatgcctccaaagtgtctctatttatagagaaaattatgtcttacagtgaagagaaataactatttagaagagtttgttaataaacggttagac 24870279  T
Q  421 tgattcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatatt 494  Q
    || |||| |  ||| |||||||||  |||| |||||||||||  ||||||| |||||||||||| |||| ||||    
T  24870278 tgcttcattgatcacgcattacaccctttcactaaaaggtct-attttaactattgcaacttttcaaatttatt 24870206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 12239497 - 12239565
Alignment:
Q  80 tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgccccc 148  Q
    ||||||| |||||||||||||| ||  ||||||||||| |||| ||||||||| |||||||||||||||    
T  12239497 tgatgaagtgtgcacataaatttcaaagcgtgtgtgggacacattaacctttaggttcgattcgccccc 12239565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 37469178 - 37469116
Alignment:
Q  12 agaacctgtgttgggg-tctgctgcaataacttcatcaagaagatgataaagatgaacatgat 73  Q
    |||||||||||||||| | ||| |||||||||| |||||||||||||| ||||||||||||||    
T  37469178 agaacctgtgttgggggtttgcagcaataacttgatcaagaagatgatgaagatgaacatgat 37469116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 5437036 - 5436988
Alignment:
Q  33 tgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtg 81  Q
    ||||||||||| | |||||||||||| ||||||||||||||||| ||||    
T  5437036 tgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtg 5436988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 404 - 484
Target Start/End: Original strand, 34091727 - 34091806
Alignment:
Q  404 ttcatgaatgattacattgattcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaactttt 484  Q
    |||||||||||||||| |  ||||||| |||| |||||||| |||| | |||||||||| | ||||||||||| |||||||    
T  34091727 ttcatgaatgattacactacttcaattatcaaacattacacatttt-tttaaaaggtctttatttaaccattgtaactttt 34091806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 457
Target Start/End: Complemental strand, 24533275 - 24533212
Alignment:
Q  394 aaagagtttgttcatgaatgattacattgattcaattgtcaagcattacactttttctctaaaa 457  Q
    |||| ||||||||||||||| |||||||| | ||||||| || |||||||  ||||||||||||    
T  24533275 aaagtgtttgttcatgaatggttacattgctacaattgttaaacattacatattttctctaaaa 24533212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 334
Target Start/End: Complemental strand, 24871468 - 24871385
Alignment:
Q  251 ctctcgtacactaaagaagagaacgaataatttagtataattttcggcagaatttagactcacagcaatgtgattttctgtctc 334  Q
    ||||||| |||| ||||| |||  |||| ||||| ||| |||||||||||||||| ||||||||  |||||||| ||| |||||    
T  24871468 ctctcgtgcacttaagaaaagagagaatgatttaatattattttcggcagaattttgactcacaataatgtgatattcggtctc 24871385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 24870616 - 24870567
Alignment:
Q  123 ctaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaa 172  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||||||||    
T  24870616 ctaacctttaagttcgattcg-cccctaccagttatgccaaccggatgcaa 24870567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 24870718 - 24870652
Alignment:
Q  12 agaacctgtgttgggg-tctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaat 77  Q
    ||||||| |||||||| | |||||||||||||| || ||||||||||| |||||  |||||||||||    
T  24870718 agaacctatgttgggggtttgctgcaataacttgatgaagaagatgatgaagatagacatgatgaat 24870652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 1e-34; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 324 - 510
Target Start/End: Original strand, 28612324 - 28612508
Alignment:
Q  324 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattga 423  Q
    ||||||| ||| ||||||||| | |||||| ||||||||||||||||||||||||| ||| || |  ||  ||||||||||||||||||  ||| ||||     
T  28612324 ttttctgcctcgaaagtgtctatctttataaagaaacttatgtcatttggtgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgc 28612423  T
Q  424 ttcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctca 510  Q
    |||||||||||| || ||||| ||| |||||||||| |||| |||||||||| |||  ||| |||||||||||| ||||||||||||    
T  28612424 ttcaattgtcaaacaatacacctttgctctaaaaggcctctatttaaccattacaa--ttttaaatatattttggaaatttctctca 28612508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 170 - 327
Target Start/End: Original strand, 28612144 - 28612303
Alignment:
Q  170 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caacggtagcttacaaaataaagttctgacaattctc-tcgtacactaaaga 267  Q
    |||| ||||||||||||||||||| || |||||| ||||  |||||  ||| |||||  ||||||| || |||||| |||||| | |||| ||||| |||    
T  28612144 caatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcaatggtagtatacaaaacaatgttctgtcaattcccctcgtgcactagaga 28612243  T
Q  268 agagaacgaataatttagtataattttcggcagaatttagactcacagcaatgtgatttt 327  Q
      |||| |||| |||||||||||||||||||||||||| ||||||||  |||||||||||    
T  28612244 taagaaagaatgatttagtataattttcggcagaatttcgactcacaagaatgtgatttt 28612303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 24075623 - 24075684
Alignment:
Q  12 agaacctgtgtt-ggggtctgctgcaataacttcatcaagaagatgataaagatgaacatga 72  Q
    |||||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||    
T  24075623 agaacctgtgttaggggtctgctgcaataacttgattaagaagatgataaagatgaatatga 24075684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 28611983 - 28612034
Alignment:
Q  30 tgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtg 81  Q
    |||||||||||||| |||||||||||||| || |||||||||||||| ||||    
T  28611983 tgctgcaataacttgatcaagaagatgatgaatatgaacatgatgaagtgtg 28612034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 11932187 - 11932104
Alignment:
Q  89 gtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaa 172  Q
    ||||||||||||| ||  || ||||| || |||||||||||||| ||| ||||||| |||||| | |||||||||||||||||||    
T  11932187 gtgcacataaatttcaaagcatgtgttggacacactaacctttaggtttgattcgc-ccccactagttatgccaaccggatgcaa 11932104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 6e-33; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 176 - 334
Target Start/End: Complemental strand, 49053905 - 49053745
Alignment:
Q  176 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagcttacaaaataaagttctgacaa-ttctctcgtacactaaagaagagaac 274  Q
    ||||||||||||||||||||| |||||| ||||  ||||||||| ||||| |||||||||||||||||| ||| ||| ||||| ||||| |||||||||     
T  49053905 aatccttgacgtgacttgcacattcacaccaagcatatcgacaatggtagtttacaaaataaagttctgccaatttccctcgtgcactagagaagagaaa 49053806  T
Q  275 gaataatttagtataa-ttttcggcagaatttagactcacagcaatgtgattttctgtctc 334  Q
    |||| ||||||||||| |||| |||||||||  ||| |||| |||||||||||| ||||||    
T  49053805 gaatgatttagtataattttttggcagaattatgacacacaacaatgtgattttatgtctc 49053745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 170 - 334
Target Start/End: Complemental strand, 49061491 - 49061325
Alignment:
Q  170 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagcttacaaaataaagttctgacaa-ttctctcgtacactaaagaa 268  Q
    |||| ||||||||||||||| |||||| |||||| |||   ||||||||| ||||| ||||| ||||||||| || ||| ||| ||||| ||||| ||||    
T  49061491 caatggaatccttgacgtgatttgcacattcacaccaaacatatcgacaatggtagtttacagaataaagttttgtcaatttccctcgtgcactagagaa 49061392  T
Q  269 gagaacgaataatttagtataa-ttttcggcagaatttagactcacagcaatgtgattttctgtctc 334  Q
     |||| |||| ||||||||||| ||||||||||||||  ||| |||| |||||||||||| ||||||    
T  49061391 aagaaagaatgatttagtataatttttcggcagaattatgacacacaacaatgtgattttatgtctc 49061325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 340 - 513
Target Start/End: Complemental strand, 49053713 - 49053554
Alignment:
Q  340 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcat 439  Q
    ||||| |||||||| | ||||||||||| ||||||||||||| | || |  || |||||||||||| ||||||| ||||||||              ||     
T  49053713 tgtctatatttatataaaaacttatgtcctttggtgaagagacacaatcatttgaaagagtttgtttatgaatggttacattg--------------caa 49053628  T
Q  440 tacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 513  Q
    ||||| ||||| ||||||||||| | ||||||||||||||||||  |||||||||||| |||||||||||||||    
T  49053627 tacaccttttcactaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctcacaa 49053554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 17458345 - 17458239
Alignment:
Q  336 aaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaa 435  Q
    ||||| |||| ||||||||| ||||||||||| ||||||||||||||| |||   || ||||| ||||||| |||||| ||||||||  | |||||||||    
T  17458345 aaagtatctcaatttatagataaacttatgtcctttggtgaagagaaacaactacttgaaagaatttgttcttgaatggttacattgcatgaattgtcaa 17458246  T
Q  436 gcattac 442  Q
     ||||||    
T  17458245 acattac 17458239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 452 - 514
Target Start/End: Complemental strand, 49061195 - 49061133
Alignment:
Q  452 ctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 514  Q
    ||||||||||| | ||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  49061195 ctaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctcacaat 49061133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 335 - 497
Target Start/End: Complemental strand, 50059430 - 50059269
Alignment:
Q  335 caaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtca 434  Q
    |||||||||| |||||||||| || |||||||| ||| ||||| ||||| | | | ||||||||| ||||| | ||||| |||||||| ||  ||  |||    
T  50059430 caaagtgtctttatttatagaaaatcttatgtcttttagtgaacagaaaca-ctttttaaaagagcttgtttacgaatggttacattgctttgatgttca 50059332  T
Q  435 agcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttg 497  Q
    |||||||||| | ||| ||| || |||||| |||||| | ||||| |||| ||||||||||||    
T  50059331 agcattacacctcttcactataatgtctctatttaacgactgcaattttttaaatatattttg 50059269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 49054036 - 49053944
Alignment:
Q  80 tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaa 172  Q
    ||||||| ||| |||||||||||||  |||||||||||  ||||||||||||| ||||||||||| |||||||| |||| ||||| ||||||||    
T  49054036 tgatgaagtgtacacataaattccaatgcgtgtgtgggaaacactaacctttaggttcgattcgc-ccccaccagttataccaactggatgcaa 49053944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 44524533 - 44524481
Alignment:
Q  24 ggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaa 76  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  44524533 ggggtctgttgcaataacttgatcaagaagatgatgaagatgaacatgatgaa 44524481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 49061674 - 49061524
Alignment:
Q  12 agaacctgtgttggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtgatgaattgtgcacataaattccatggcgtg 111  Q
    ||||| ||||||||||||||||||||||| || | ||| |||||||  |||||||||||||          |||| ||||||||||||||| |  |||||    
T  49061674 agaacttgtgttggggtctgctgcaataattttaccaaaaagatgaagaagatgaacatga----------tgaagtgtgcacataaattctaaagcgtg 49061585  T
Q  112 tgtgggccacactaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaa 172  Q
    ||||||  ||||||  ||||| |||||||||| ||||||||| ||||||||||  |||||||    
T  49061584 tgtgggaaacactagtctttaggttcgattcg-cccccaccagttatgccaactagatgcaa 49061524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 21432180 - 21432123
Alignment:
Q  24 ggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtg 81  Q
    |||||||||||||||||||| | |||||||||||| |||||||||||| |||| ||||    
T  21432180 ggggtctgctgcaataacttgaccaagaagatgatgaagatgaacatgctgaagtgtg 21432123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 48366557 - 48366509
Alignment:
Q  33 tgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtg 81  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  48366557 tgcaataacttgatcaagaagatgatgaagatgaacatgatgaagtgtg 48366509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 10917470 - 10917415
Alignment:
Q  324 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagaga 381  Q
    ||||||| |||||||||||||  ||||||||||||||||||||| ||| |||||||||    
T  10917470 ttttctgcctccaaagtgtct--atttatagagaaacttatgtcctttagtgaagaga 10917415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 10187091 - 10187039
Alignment:
Q  24 ggggtctgctgcaataacttcatcaagaagatgataaagatgaacatgatgaa 76  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||  ||||||||    
T  10187091 ggggtctgctacaataacttgatcaagaagatgataaatatgactatgatgaa 10187039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 29681289 - 29681337
Alignment:
Q  33 tgcaataacttcatcaagaagatgataaagatgaacatgatgaattgtg 81  Q
    ||||||||||| | |||||||||||| ||||||||||||||||| ||||    
T  29681289 tgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtg 29681337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 35624693 - 35624749
Alignment:
Q  12 agaacctgtgttgggg-tctgctgcaataacttcatcaagaagatgataaagatgaa 67  Q
    ||||| |||||||||| |||||||||||||||| | |||||||||||| ||||||||    
T  35624693 agaacttgtgttgggggtctgctgcaataacttgaccaagaagatgatgaagatgaa 35624749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 52282180 - 52282226
Alignment:
Q  324 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcattt 371  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||||    
T  52282180 ttttctgtctc-aaagtgtctctatttatagataaatttatgtcattt 52282226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 340 - 422
Target Start/End: Complemental strand, 49061293 - 49061211
Alignment:
Q  340 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 422  Q
    |||||||||||||| ||||||||||||| ||| ||||||||| | ||    || ||||| |||||| ||||||| ||||||||    
T  49061293 tgtctctatttatatagaaacttatgtcctttcgtgaagagacacaattatttgaaagaatttgtttatgaatggttacattg 49061211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 68; Significance: 6e-30; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 323 - 514
Target Start/End: Complemental strand, 217689 - 217508
Alignment:
Q  323 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 422  Q
    |||||||| ||| |||||||||  |||||||||||||||||||||||||||| |||| ||| ||||| || ||||||||||| |||||||        ||    
T  217689 attttctgcctctaaagtgtct--atttatagagaaacttatgtcatttggtaaagataaacaaccttttgaaagagtttgtccatgaat--------tg 217600  T
Q  423 attcaattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 514  Q
     ||  ||||||||| ||||| | ||||||||||||| ||||| |||||||||||||||||||  | ||||||| | ||||||||||||||||    
T  217599 ctttgattgtcaagaattacgcattttctctaaaagatctctatttaaccattgcaacttttttattatatttcggaaatttctctcacaat 217508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 335 - 507
Target Start/End: Complemental strand, 215816 - 215646
Alignment:
Q  335 caaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtca 434  Q
    |||||||||||| | |||||| ||||||||||| |||||||||||||||| |||  ||||| |  |||||| ||||||| |||||    |||||| ||||    
T  215816 caaagtgtctctgtctatagaaaaacttatgtcctttggtgaagagaaatgaccctttaaatggatttgtttatgaatggttacaac--ttcaatcgtca 215719  T
Q  435 agcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctc 507  Q
    | |||||||  ||||||  ||||| ||||| ||||||||||||||||||  |||||||||||| |||||||||    
T  215718 aacattacatattttcttcaaaagatctctatttaaccattgcaactttctaaatatattttggaaatttctc 215646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 176 - 327
Target Start/End: Complemental strand, 217861 - 217708
Alignment:
Q  176 aatccttgacgtgacttgcacgttcacatcaagtgtatcga-caacggtagcttacaaaataaagttctgacaatt-ctctcgtacactaaagaagagaa 273  Q
    ||||||||| | ||||||||| |||||| |||||||||||| ||| ||||| ||||||||||| |||||| ||||| |||||||  |||| |||| ||||    
T  217861 aatccttgaagagacttgcacattcacaccaagtgtatcgatcaatggtagtttacaaaataatgttctgccaatttctctcgtgaactagagaaaagaa 217762  T
Q  274 cgaataatttagtataattttcggcagaatttagactcacagcaatgtgatttt 327  Q
     |||| |||||| || |||||||||||||||  ||| |||| ||||||||||||    
T  217761 agaattatttagaattattttcggcagaattctgacacacaacaatgtgatttt 217708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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