View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_30 (Length: 363)
Name: NF18278_low_30
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 26034918 - 26034586
Alignment:
| Q |
18 |
ggaggcagcaacttcagaagatataggatcaacttgaacctcagtattattcccaggattcagttctgcagcaatatctgcagatggaaacgtttcgtct |
117 |
Q |
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| T |
26034918 |
ggaggcagcaacttcagaagatataggatcaacttgaacctcagtattattcccaggattcagttctgcagcaatatctgcagatggaaacgtttcgtct |
26034819 |
T |
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| Q |
118 |
gagttttcaggtgagctagccatatttccttctatagctatcaagcaatgttactctaacgttgttatggaataatggtgtgggagagaaaagagaagag |
217 |
Q |
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| T |
26034818 |
gagttctcagttgagctagccatatttccttctatagctatcaagcaatgttactctaacgttgttatggaataatggtgtgggagagaaaagagaagag |
26034719 |
T |
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| Q |
218 |
aaattaagaaataatgaatcaaaacattatcaaggatcaatgccnnnnnnngttgttaattttaaattgacacgtgccagtgttccgaattatgaggatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26034718 |
aaattaagaaataatgaatcaaaacattatcaaggatcaatgccaaaaaaagttgttaattttaaattgacacgtgctagtgttccgaattatgaggatg |
26034619 |
T |
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| Q |
318 |
ttatagctttcttgttctcaaacttgccgatat |
350 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
26034618 |
ttatagctttcttgttctcaaacttgccgatat |
26034586 |
T |
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