View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18278_low_35 (Length: 345)

Name: NF18278_low_35
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18278_low_35
NF18278_low_35
[»] chr5 (3 HSPs)
chr5 (18-332)||(9712258-9712572)
chr5 (260-327)||(9724346-9724413)
chr5 (104-168)||(16127056-16127120)
[»] chr7 (2 HSPs)
chr7 (41-91)||(36909607-36909657)
chr7 (104-157)||(6824305-6824358)
[»] chr8 (2 HSPs)
chr8 (215-283)||(31106371-31106440)
chr8 (51-91)||(6020663-6020703)
[»] scaffold0316 (1 HSPs)
scaffold0316 (47-90)||(16023-16066)
[»] chr4 (2 HSPs)
chr4 (104-154)||(4161642-4161692)
chr4 (104-141)||(971878-971915)
[»] chr6 (1 HSPs)
chr6 (22-91)||(2782983-2783052)
[»] chr2 (2 HSPs)
chr2 (25-66)||(37561553-37561594)
chr2 (104-168)||(17220847-17220911)


Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 9712572 - 9712258
Alignment:
Q  18 aagtttagcggaatcacggcaagccaccatgattttggcaaaagctacattctagagcttcaacaaaatcatggcgccgtgagtactttgaaattttgat 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712572 aagtttagcggaatcacggcaagccaccatggttttggcaaaagctacattttagagcttcaacaaaatcatggcgccgtgagtactttgaaattttgat 9712473  T
Q  118 acattcaaagactattgtgacaacacatcacacatttaaggtccaaaatgattgtttactccattgagaaattacatttttaaggagcatcaaaggttat 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712472 acattcaaagactattgtgacaacacatcacacatgtaaggtccaaaatgattgtttactccattgagaaattacatttttaaggagcatcaaaggttat 9712373  T
Q  218 gaacatgtatctgcttggcaggtatattggagtttctactggtaatatttcagttttgaagcttgatcaaaatttgcatgtggtacggatgagttacact 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712372 gaacatgtatctgcttggcaggtatattggagtttctactggtaatatttcagttttgaagcttgatcaaaatttgcatgtggtacggatgagttacact 9712273  T
Q  318 atacccctctctgct 332  Q
    |||||||||||||||    
T  9712272 atacccctctctgct 9712258  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 9724413 - 9724346
Alignment:
Q  260 taatatttcagttttgaagcttgatcaaaatttgcatgtggtacggatgagttacactatacccctct 327  Q
    |||||||||||||||||||||||||||||||||||| ||||||  | ||| |||||| ||||||||||    
T  9724413 taatatttcagttttgaagcttgatcaaaatttgcacgtggtaaagttgaattacaccatacccctct 9724346  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 16127120 - 16127056
Alignment:
Q  104 tttgaaattttgatacattcaaagactattgtgacaacacatcacacatttaaggtccaaaatga 168  Q
    |||||||||||||||| || | ||||||||||||| || | | ||||||||| || |||||||||    
T  16127120 tttgaaattttgatactttgagagactattgtgactactccttacacatttagggaccaaaatga 16127056  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 36909607 - 36909657
Alignment:
Q  41 ccaccatgattttggcaaaagctacattctagagcttcaacaaaatcatgg 91  Q
    |||||||||||||| ||| ||||||| |||||||||| |||||||||||||    
T  36909607 ccaccatgattttgacaagagctacactctagagctttaacaaaatcatgg 36909657  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 6824358 - 6824305
Alignment:
Q  104 tttgaaattttgatacattcaaagactattgtgacaacacatcacacatttaag 157  Q
    |||| ||||||||||||| |||||| ||| | || |||||||||||||||||||    
T  6824358 tttgtaattttgatacatgcaaagattatagcgaaaacacatcacacatttaag 6824305  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 31106371 - 31106440
Alignment:
Q  215 tatgaacatgtatctgc-ttggcaggtatattggagtttctactggtaatatttcagttttgaagcttga 283  Q
    ||||||||||||||||  |||  ||||||||||||  ||||| ||||||||| |||||||||||||||||    
T  31106371 tatgaacatgtatctgtgttgataggtatattggacattctaatggtaatatatcagttttgaagcttga 31106440  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 6020703 - 6020663
Alignment:
Q  51 tttggcaaaagctacattctagagcttcaacaaaatcatgg 91  Q
    |||||||||| ||||| | ||||||||||||||||||||||    
T  6020703 tttggcaaaaactacactttagagcttcaacaaaatcatgg 6020663  T

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Target: scaffold0316 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 16066 - 16023
Alignment:
Q  47 tgattttggcaaaagctacattctagagcttcaacaaaatcatg 90  Q
    |||||||||||||||||||||| | || ||||||||||||||||    
T  16066 tgattttggcaaaagctacattttggaacttcaacaaaatcatg 16023  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 4161692 - 4161642
Alignment:
Q  104 tttgaaattttgatacattcaaagactattgtgacaacacatcacacattt 154  Q
    ||||||||||||||||||| || |||||||||||| || ||| ||||||||    
T  4161692 tttgaaattttgatacattgaaggactattgtgactactcattacacattt 4161642  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 971915 - 971878
Alignment:
Q  104 tttgaaattttgatacattcaaagactattgtgacaac 141  Q
    ||||||||||||||||||| || |||||||||||||||    
T  971915 tttgaaattttgatacattgaatgactattgtgacaac 971878  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 2782983 - 2783052
Alignment:
Q  22 ttagcggaatcacggcaagccaccatgattttggcaaaagctacattctagagcttcaacaaaatcatgg 91  Q
    |||| ||||||||||| |||||| |||||||||   |||||| || | | ||||||||||||||||||||    
T  2782983 ttagtggaatcacggcgagccactatgattttgttgaaagctgcactttggagcttcaacaaaatcatgg 2783052  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 37561553 - 37561594
Alignment:
Q  25 gcggaatcacggcaagccaccatgattttggcaaaagctaca 66  Q
    ||||||||||||  |||||||||||||||| |||||||||||    
T  37561553 gcggaatcacggtgagccaccatgattttgccaaaagctaca 37561594  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 17220847 - 17220911
Alignment:
Q  104 tttgaaattttgatacattcaaagactattgtgacaacacatcacacatttaaggtccaaaatga 168  Q
    |||| |||||||||||||| |  |||||||||||||  || ||| |||||||||| |||||||||    
T  17220847 tttgtaattttgatacatttagcgactattgtgacaggacttcaaacatttaaggaccaaaatga 17220911  T

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