View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_36 (Length: 345)
Name: NF18278_low_36
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 35107135 - 35107488
Alignment:
| Q |
1 |
agagatcaagaagcctgaaatcaaagccattgaaatctctggttaa-ctcagaacaagctttgttactcgtcttttgttt-------------------- |
79 |
Q |
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| T |
35107135 |
agagatcaagaagcctgaagtcaaagccattgaaatctctggttaaactcagaacaagctttgttactcgtcttttgtttaattcgtgtgctttttttgg |
35107234 |
T |
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| Q |
80 |
--gttttgtaatgcttactttgtttgtgatgtctgtgcaagaaatctatgatg-----atgtaatatgtgagatgttaatccataaatgaataagtaaac |
172 |
Q |
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| T |
35107235 |
ttgttttgtaatgcttactttgtttgtgatgtctgtgcaaggaatacttggtgttataatgtaatatgtgagatgttaatccataaatgaataagtaaac |
35107334 |
T |
|
| Q |
173 |
agttgttattcttcttggtgttatattagtatttgtattccaaggaatacttggtgttatacatagttggccttatactttgtaaaccattttcaagaca |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35107335 |
agttgttattcttcttggtgttatattagtatttgtattccaaggaatacttggtgttatacttagttggccttatactttgtaaaccattttcaagaca |
35107434 |
T |
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| Q |
273 |
gacttttaatgagctcaatggcagatgacattggtactgtaactaattgtcatt |
326 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
35107435 |
gacttttaatgagctcaatggcagatgaaattggtactgtaactgattgtcatt |
35107488 |
T |
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