View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_37 (Length: 338)
Name: NF18278_low_37
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 21550153 - 21549881
Alignment:
| Q |
1 |
caaatatcaaaccacaaaggcaaagatcacattaacttaatttcagatcaggttaagatctaatacacggtttcagctttccacaatcatgaattatgag |
100 |
Q |
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| T |
21550153 |
caaatatcaaaccacaaaggcaaagatcacgttaacttaatttcagatcaggttaagatctaatacacggtttcagctttccacaatcatgaattatgag |
21550054 |
T |
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| Q |
101 |
acatgaattt--agcaatggaagttataaatgactgtgacataacaacttggagtcattcaatgggagaaaatacaggcataatggttcgcagatcaaat |
198 |
Q |
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| T |
21550053 |
acatgaatttttagcaatggaagtaataaatgactatgacataacaacttggagtcattcaatgggagaaaatacaggcataatggttcgcagatcaaat |
21549954 |
T |
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| Q |
199 |
taagaaagaaatgaaactctaaaggattcaagacatagatatgttcatatgaaacggtgagagatatcatcca |
271 |
Q |
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| T |
21549953 |
taagaaagaaatgaaactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatcatcca |
21549881 |
T |
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Back To:
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Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 20362440 - 20362170
Alignment:
| Q |
1 |
caaatatcaaaccacaaaggcaa--agatcacattaacttaatttcagatcaggttaagatctaatacacggtttcagctttccacaatcatgaattatg |
98 |
Q |
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| T |
20362440 |
caaatatcaaaccacaaaggcaagaagatcacattaacttaatttcaga---------gatctaatacacggtttcagcattccacaatcatgaattatg |
20362350 |
T |
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| Q |
99 |
agacatgaatttagcaatggaagttataaatgactgtgacataacaacttggagtcattcaatgggagaaaatacaggcataatggttcgcagatcaaat |
198 |
Q |
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| T |
20362349 |
agacatgaatttagcaatggaagtaataaatgactgtgacataacaacttctagtcattcaatgggag------cagacataatggttcgcggatcaaat |
20362256 |
T |
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| Q |
199 |
taagaaagaaatgaaactctaaaggattcaagacatagatatgttcatatgaaacggtgagagatatcat-ccaattatacagaaa |
283 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |
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| T |
20362255 |
taaaaaagaaacgaaactctaaaggattcaagacatagatatgttcatatgaaacagtgagagatatcatcccaattacacagaaa |
20362170 |
T |
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