View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18278_low_38 (Length: 335)

Name: NF18278_low_38
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18278_low_38
NF18278_low_38
[»] scaffold0036 (1 HSPs)
scaffold0036 (217-317)||(87304-87404)
[»] chr7 (16 HSPs)
chr7 (95-196)||(40278299-40278401)
chr7 (10-78)||(27313695-27313763)
chr7 (11-61)||(33181172-33181222)
chr7 (11-69)||(48983695-48983753)
chr7 (10-78)||(17040973-17041041)
chr7 (10-78)||(21558175-21558243)
chr7 (10-78)||(11720921-11720989)
chr7 (10-78)||(15137600-15137668)
chr7 (10-66)||(15905635-15905691)
chr7 (11-67)||(24438209-24438265)
chr7 (11-78)||(41519072-41519139)
chr7 (10-78)||(9183152-9183220)
chr7 (13-78)||(29196952-29197019)
chr7 (10-66)||(37473673-37473729)
chr7 (10-78)||(41519226-41519293)
chr7 (14-78)||(42712005-42712069)
[»] chr4 (12 HSPs)
chr4 (95-196)||(34457145-34457247)
chr4 (10-79)||(9693459-9693528)
chr4 (10-78)||(8030165-8030233)
chr4 (13-78)||(21375824-21375889)
chr4 (10-78)||(7949415-7949483)
chr4 (241-300)||(12175478-12175537)
chr4 (11-78)||(31826656-31826723)
chr4 (10-78)||(38869815-38869883)
chr4 (10-78)||(7292759-7292827)
chr4 (10-78)||(23378003-23378071)
chr4 (142-186)||(38582163-38582207)
chr4 (10-66)||(47386752-47386808)
[»] chr3 (15 HSPs)
chr3 (10-78)||(8075088-8075156)
chr3 (241-303)||(13663627-13663689)
chr3 (10-69)||(46552987-46553046)
chr3 (10-78)||(3427515-3427582)
chr3 (10-78)||(44743816-44743884)
chr3 (11-78)||(36720428-36720495)
chr3 (11-78)||(37788428-37788494)
chr3 (33-78)||(32651422-32651467)
chr3 (10-78)||(2709424-2709492)
chr3 (18-78)||(8170719-8170779)
chr3 (13-65)||(9832545-9832597)
chr3 (10-78)||(13808846-13808914)
chr3 (14-78)||(33899661-33899725)
chr3 (10-78)||(49452920-49452987)
chr3 (10-66)||(52769944-52770000)
[»] chr1 (15 HSPs)
chr1 (10-78)||(6122841-6122909)
chr1 (10-78)||(10526870-10526938)
chr1 (10-78)||(48391293-48391361)
chr1 (11-78)||(44961812-44961879)
chr1 (10-56)||(31794225-31794271)
chr1 (10-78)||(8177143-8177211)
chr1 (11-78)||(3799953-3800020)
chr1 (17-75)||(42787258-42787316)
chr1 (10-75)||(40810517-40810582)
chr1 (10-78)||(2799909-2799977)
chr1 (10-78)||(6650642-6650710)
chr1 (10-78)||(17745218-17745285)
chr1 (10-78)||(39979131-39979199)
chr1 (14-66)||(40814373-40814425)
chr1 (14-78)||(51814541-51814605)
[»] chr8 (11 HSPs)
chr8 (10-78)||(11819823-11819891)
chr8 (10-78)||(44780075-44780143)
chr8 (11-78)||(33727835-33727902)
chr8 (11-78)||(27750777-27750844)
chr8 (11-78)||(31408084-31408151)
chr8 (10-78)||(6536567-6536635)
chr8 (11-75)||(43594280-43594344)
chr8 (14-77)||(13129716-13129779)
chr8 (10-66)||(7347896-7347952)
chr8 (33-69)||(13456495-13456531)
chr8 (11-47)||(43471214-43471250)
[»] chr6 (14 HSPs)
chr6 (10-78)||(20213088-20213156)
chr6 (10-78)||(22107111-22107179)
chr6 (11-78)||(14199909-14199976)
chr6 (241-303)||(21050494-21050556)
chr6 (10-78)||(12188264-12188332)
chr6 (11-50)||(665131-665170)
chr6 (11-77)||(13330135-13330201)
chr6 (28-78)||(17328243-17328293)
chr6 (11-56)||(1992209-1992254)
chr6 (14-78)||(3172733-3172797)
chr6 (14-78)||(10338139-10338203)
chr6 (10-78)||(11306135-11306203)
chr6 (18-78)||(28363984-28364044)
chr6 (10-42)||(31282525-31282557)
[»] chr2 (9 HSPs)
chr2 (11-78)||(21195638-21195705)
chr2 (10-78)||(21303955-21304023)
chr2 (11-78)||(6859274-6859341)
chr2 (10-78)||(1435111-1435178)
chr2 (11-78)||(12497744-12497811)
chr2 (10-61)||(25931070-25931121)
chr2 (10-78)||(23230566-23230634)
chr2 (10-78)||(34041549-34041617)
chr2 (14-66)||(39764992-39765044)
[»] chr5 (12 HSPs)
chr5 (10-78)||(17028225-17028293)
chr5 (10-78)||(28285299-28285367)
chr5 (11-78)||(37258328-37258395)
chr5 (11-66)||(18206608-18206663)
chr5 (11-78)||(29173537-29173604)
chr5 (10-76)||(27596376-27596442)
chr5 (14-67)||(5156090-5156143)
chr5 (11-56)||(11352052-11352097)
chr5 (10-78)||(22737129-22737197)
chr5 (10-78)||(25627104-25627171)
chr5 (10-78)||(35796580-35796648)
chr5 (10-78)||(43442243-43442311)
[»] scaffold0300 (1 HSPs)
scaffold0300 (10-67)||(4398-4455)
[»] scaffold0006 (1 HSPs)
scaffold0006 (10-78)||(18346-18413)


Alignment Details
Target: scaffold0036 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 87304 - 87404
Alignment:
Q  217 atccaaacatacaactaattagacctaaaccttttgaagccaatttatctgcacacctatttccttctatgtagatatgagttacaagtctaacctctta 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    | ||||||||||||||||| | ||||||||    
T  87304 atccaaacatacaactaattagacctaaaccttttgaagccaatttgtctgcacacctatttcctttccaggagatatgagttacaagtttgacctctta 87403  T
Q  317 a 317  Q
    |    
T  87404 a 87404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 40278299 - 40278401
Alignment:
Q  95 atttggtgtagatgaccatgttaagatttggtatggtagcctaatcta-tggtgggaaaaattggtccagtatggaccaatacatcaatgggttcaggct 193  Q
    |||||||| ||||||||||||||||||| |||| | |||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  40278299 atttggtgcagatgaccatgttaagattaggtaggatagcctaatccaatggtgggaaaaattggtccagtatggaccaatacatcaataggtccaggct 40278398  T
Q  194 ata 196  Q
    |||    
T  40278399 ata 40278401  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 27313695 - 27313763
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| |||||| |||||| ||  |||| ||||||||||||||||||||| ||||||||    
T  27313695 gaagaagctaaattagctcacctaaattggcatcagagagaatcgaatctgaaaccttgaggaggagca 27313763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 33181172 - 33181222
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctga 61  Q
    |||||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  33181172 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctga 33181222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 48983695 - 48983753
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttga 69  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||| |||| |||||||    
T  48983695 aagaagttaaattagcccacccaaattgacactagagggaatcgaacctgagaccttga 48983753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 17040973 - 17041041
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||||| || ||||||||||| |||| ||| |||||||| |||| ||||||| ||||||||    
T  17040973 gaagaagctaaattgacccacccaaattggcacttgagagaatcgaacctgagaccttgaggaggagca 17041041  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 21558243 - 21558175
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||||| |||| |||||| ||| |||| |||||||| |||| ||||||| ||||||||    
T  21558243 gaagaagctaaattaacccacctaaattggcaccagagagaatcgaacctgagaccttgaggaggagca 21558175  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 11720921 - 11720989
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| | ||||||||||| |||| | | ||||||||||||| ||||| | ||||||||    
T  11720921 gaagaagctaaattagcccacccaaattggcactggggagaatcgaatctgataccttaaggaggagca 11720989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 15137668 - 15137600
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||| |||||||| | ||||||||||||||| |||| ||||| || |||| ||||||| ||||||||    
T  15137668 gaagaaactaaattagcccacccaaattgacaccagagagaatctaacctgagaccttgaggaggagca 15137600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 15905635 - 15905691
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaacct 66  Q
    ||||||||||||||||| |||||||||||||| ||| | |||||||| |||| ||||    
T  15905635 gaagaagctaaattaacccacccaaattgacattagggagaatcgaacctgagacct 15905691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 24438209 - 24438265
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaacctt 67  Q
    |||||||||||||| | ||  ||||||||||| |||| |||||||||||||||||||    
T  24438209 aagaagctaaattagcccattcaaattgacaccagagagaatcgaatctgaaacctt 24438265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 41519072 - 41519139
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||||| | |||||||||||||||  |||  |||||||||||| |||||||  |||||||    
T  41519072 aagaagctaaattagcccacccaaattgacaccggagataatcgaatctgagaccttgagaaggagca 41519139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 9183152 - 9183220
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||| |||||||| | ||||||||||||||| ||||  ||||||| |||| || |||| ||||||||    
T  9183152 gaagaaactaaattagcccacccaaattgacaccagagataatcgaacctgagactttgaggaggagca 9183220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 29197019 - 29196952
Alignment:
Q  13 gaagctaaattaactcacccaaattgacactagaggg--aatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||  ||||||| ||||||||||||| |  ||||||| |||| |||||||||| |||||    
T  29197019 gaagctaaattagatcacccatattgacactagagagaaaatcgaacctgagaccttgaagacgagca 29196952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 37473729 - 37473673
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaacct 66  Q
    ||||||||||||||||| |||| ||||||||| ||| | |||||||| |||| ||||    
T  37473729 gaagaagctaaattaacccacctaaattgacattagggagaatcgaacctgagacct 37473673  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 41519226 - 41519293
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| | |||| |||||||||| |||| ||| |||| |||| ||||||| ||||||||    
T  41519226 gaagaagctaaattagcccacctaaattgacac-agagagaagcgaacctgagaccttgaggaggagca 41519293  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 42712069 - 42712005
Alignment:
Q  14 aagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||| | |||| ||||||||||||| | ||||||||  ||| ||||||| ||||||||    
T  42712069 aagctaaattagcccacctaaattgacactagggagaatcgaacatgagaccttgaggaggagca 42712005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 34457145 - 34457247
Alignment:
Q  95 atttggtgtagatgaccatgttaagatttggtatggtagcctaatcta-tggtgggaaaaattggtccagtatggaccaatacatcaatgggttcaggct 193  Q
    |||||||| ||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||||||||||||||||||||||||| |||  |||||    
T  34457145 atttggtgcagatgaccatgttaaaattaggtaggatagcctaatccaatggtgggaaaaattggtccagtatggaccaatacatcaataggtctaggct 34457244  T
Q  194 ata 196  Q
    |||    
T  34457245 ata 34457247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 9693459 - 9693528
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagcag 79  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  9693459 gaagaaggtaaattagcccacccaaattgacactagagggaatcgaacctgagaccttgaggaggagcag 9693528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 8030165 - 8030233
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||  ||| ||||||| ||||||||    
T  8030165 gaagaagctaaattagcccacccaaattgacactagagggaatcgaacttgagaccttgaggaggagca 8030233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 21375889 - 21375824
Alignment:
Q  13 gaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||||| || ||||||||||||||||  ||||||||||||| | ||||| ||||||||    
T  21375889 gaagctaaattaacccatccaaattgacactagaaagaatcgaatctgagagcttgaggaggagca 21375824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 7949415 - 7949483
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| | |||| |||||||||| |||| |||||||| |||| ||||||| ||||||||    
T  7949415 gaagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagca 7949483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 12175478 - 12175537
Alignment:
Q  241 ctaaaccttttgaagccaatttatctgcacacctatttccttctatgtagatatgagtta 300  Q
    ||||||||||||||||||| |||||||||||||||||  ||||| | || ||||||||||    
T  12175478 ctaaaccttttgaagccaacttatctgcacacctattatcttctctataaatatgagtta 12175537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 31826723 - 31826656
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||| ||||||| | ||||||||||||||||| |||||||||||  ||| ||||||| ||||||||    
T  31826723 aagaaggtaaattagcccacccaaattgacactaaagggaatcgaacttgagaccttgaggaggagca 31826656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 38869883 - 38869815
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||| |||| | | ||||||| ||| ||||||||||||| |||| ||||||| ||||||||    
T  38869883 gaagaagctaaactaaccccctcaaattggcaccagagggaatcgaacctgagaccttgaggaggagca 38869815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 7292759 - 7292827
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||| |||| | | ||||||| |||||||| |||||||| |||| || |||| ||||||||    
T  7292759 gaagaagctaaactaaccccctcaaattggcactagagagaatcgaacctgagactttgaggaggagca 7292827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 23378071 - 23378003
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||| || | | | ||||||| |||||||| |||||||| |||| ||||||| ||||||||    
T  23378071 gaagaagctaaactagccccctcaaattggcactagagagaatcgaacctgagaccttgaggaggagca 23378003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 38582207 - 38582163
Alignment:
Q  142 atggtgggaaaaattggtccagtatggaccaatacatcaatgggt 186  Q
    |||||||||||||||||||||  |||||||||||  |||||||||    
T  38582207 atggtgggaaaaattggtccatcatggaccaatatctcaatgggt 38582163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 47386752 - 47386808
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaacct 66  Q
    ||||||||||||||| | |||| ||||||||||||||| |||| ||| |||| ||||    
T  47386752 gaagaagctaaattagcccacctaaattgacactagagagaattgaacctgagacct 47386808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 8075088 - 8075156
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  8075088 gaagaagctaaattagcccacccaaattgacactagagggaatcgaacctgaaaccttgaggaggagca 8075156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 13663627 - 13663689
Alignment:
Q  241 ctaaaccttttgaagccaatttatctgcacacctatttccttctatgtagatatgagttacaa 303  Q
    ||||||||||||||||||| | ||||||||||||||| |||||| | || |||||||||||||    
T  13663627 ctaaaccttttgaagccaactgatctgcacacctattaccttctctataaatatgagttacaa 13663689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 46553046 - 46552987
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttga 69  Q
    |||||| ||||| |||| ||||||||||| |||||||| ||||||||||||| |||||||    
T  46553046 gaagaaactaaactaacccacccaaattggcactagagagaatcgaatctgagaccttga 46552987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 3427515 - 3427582
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||| |||||  | ||||||| |||||||| ||||||||||||| ||||||| ||||||||    
T  3427515 gaagaagctaaactaactg-ctcaaattggcactagagagaatcgaatctgagaccttgaggaggagca 3427582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 44743816 - 44743884
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||||| ||||||||||| |||| |||  ||||||| |||| |||| || ||||||||    
T  44743816 gaagaagctaaattaacccacccaaattggcactggagataatcgaacctgagacctcgaggaggagca 44743884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 36720495 - 36720428
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||  | | |||| ||||||||||||||| |||||||| ||||||||| || ||||||||    
T  36720495 aagaagctaaaccagcccacctaaattgacactagagagaatcgaacctgaaacctcgaggaggagca 36720428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 37788428 - 37788494
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||||||| | | ||||||| |||||||| |||||||| |||| ||||||| ||||||||    
T  37788428 aagaagctaaattaac-ccctcaaattggcactagagagaatcgaacctgagaccttgaggaggagca 37788494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 32651422 - 32651467
Alignment:
Q  33 aaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| ||||||||||||| | ||||| ||||||||    
T  32651422 aaattgacactagagagaatcgaatctgagatcttgaggaggagca 32651467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 2709492 - 2709424
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||| |||||||||||||||| ||  |||| ||||| || || |||||| || ||||||||    
T  2709492 gaagaagctaaactaactcacccaaattggcatcagagagaatcaaacctaaaacctcgaggaggagca 2709424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 8170779 - 8170719
Alignment:
Q  18 taaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||| | ||||||||||||||| ||||| ||||||| |||| |||||||  |||||||    
T  8170779 taaattagcccacccaaattgacaccagaggaaatcgaacctgagaccttgagtaggagca 8170719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 9832597 - 9832545
Alignment:
Q  13 gaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaacc 65  Q
    |||||||||||| | ||||||||||| ||||||| |||||||||  |||||||    
T  9832597 gaagctaaattaccccacccaaattggcactagaaggaatcgaacatgaaacc 9832545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 13808846 - 13808914
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||||  || ||||||||||| ||||| |||| ||| |||| |||| || ||||||||    
T  13808846 gaagaagctaaattaatccatccaaattgacattagagagaattgaacctgagacctagaggaggagca 13808914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 33899725 - 33899661
Alignment:
Q  14 aagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||| | ||||||||||||||| | || |||||||| |||| |||| || ||||||||    
T  33899725 aagctaaattagcacacccaaattgacaccaaagagaatcgaacctgagacctagaggaggagca 33899661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 49452987 - 49452920
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||| ||||||| | || ||||||||||||||||||| || ||| |||| ||||||| ||||||||    
T  49452987 gaagaagttaaattagcccatccaaattgacactagaggg-attgaacctgagaccttgaggaggagca 49452920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 52769944 - 52770000
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaacct 66  Q
    ||||||||||||||| | |||| |||||||||||| || |||||||| |||| ||||    
T  52769944 gaagaagctaaattagcccacctaaattgacactaaagagaatcgaacctgagacct 52770000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 6122909 - 6122841
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||||||| ||||||||    
T  6122909 gaagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagaccttgaggaggagca 6122841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 10526938 - 10526870
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||||| ||||||||||||| | |||| ||||||||||||| ||||||| ||||||||    
T  10526938 gaagaagctaaattaacccacccaaattgactccagagagaatcgaatctgagaccttgaggaggagca 10526870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 48391293 - 48391361
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||||| || ||||||| |||| ||| |||||||||||||||||||||| ||||||||    
T  48391293 gaagaagctaaattaacccatccaaattaacaccagaaggaatcgaatctgaaaccttgatgaggagca 48391361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 44961879 - 44961812
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||||| | |||||||||||||||||||| |||||||| |||| ||| ||| ||||||||    
T  44961879 aagaagctaaattagcccacccaaattgacactagagagaatcgaacctgagaccctgaggaggagca 44961812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 31794225 - 31794271
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaa 56  Q
    ||||||||||||||| | ||||||||||||||| |||||||||||||    
T  31794225 gaagaagctaaattagcccacccaaattgacaccagagggaatcgaa 31794271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 8177143 - 8177211
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||| |||| | | ||||||| ||| |||| |||||||| |||||||||||| ||||||||    
T  8177143 gaagaagctaaactaaccccctcaaattggcaccagagagaatcgaacctgaaaccttgaggaggagca 8177211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 3800020 - 3799953
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||||| | |||| |||||| |||||||| |||||||| ||||||| | || ||||||||    
T  3800020 aagaagctaaattagcccacctaaattggcactagagagaatcgaacctgaaacttcgaggaggagca 3799953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 42787316 - 42787258
Alignment:
Q  17 ctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagagga 75  Q
    |||||||||||||  |||||||||||||||| || |||||||||| || |||| |||||    
T  42787316 ctaaattaactcattcaaattgacactagagagactcgaatctgagactttgaggagga 42787258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 40810582 - 40810517
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagagga 75  Q
    |||||||||||| |||| | | ||||||| ||| |||| |||||||| |||| |||||||||||||    
T  40810582 gaagaagctaaactaaccctctcaaattggcaccagagagaatcgaacctgagaccttgaagagga 40810517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 2799977 - 2799909
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||| |||| | | ||||||| ||| |||| |||||||| |||| ||||||| ||||||||    
T  2799977 gaagaagctaaactaaccccctcaaattggcaccagagagaatcgaacctgagaccttgaggaggagca 2799909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 6650710 - 6650642
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||| |||  |||| |||||||||| |||| |||||||| |||| || |||| ||||||||    
T  6650710 gaagaagctaaactaatccacctaaattgacaccagagagaatcgaacctgagacattgaggaggagca 6650642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 17745218 - 17745285
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||||| |||| |||||||||| |||| ||||||||  ||| |||| || ||||||||    
T  17745218 gaagaagctaaattaac-cacctaaattgacaccagagagaatcgaacatgagacctcgaggaggagca 17745285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 39979199 - 39979131
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||||| ||||||||||| |||  |||  |||||||| ||| |||| || ||||||||    
T  39979199 gaagaagctaaattaacacacccaaattggcacatgagataatcgaatatgatacctcgaggaggagca 39979131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 40814373 - 40814425
Alignment:
Q  14 aagctaaattaactcacccaaattgacactagagggaatcgaatctgaaacct 66  Q
    ||||||||||| | |||  ||||||||||||||| |||||||| |||||||||    
T  40814373 aagctaaattagcccacttaaattgacactagagagaatcgaacctgaaacct 40814425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 51814605 - 51814541
Alignment:
Q  14 aagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||| | ||||||||||| |||  ||| |||||||| |||| ||||||| ||||||||    
T  51814605 aagctaaattagcccacccaaattggcaccggagagaatcgaacctgagaccttgaggaggagca 51814541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 11819891 - 11819823
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| | |||||||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  11819891 gaagaagctaaattagcccacccaaattgacactagagtgaatcgaacctgagaccttgaggaggagca 11819823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 44780075 - 44780143
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| | |||||||||||||||||||||||||| || |||| ||||||| ||||||||    
T  44780075 gaagaagctaaattagcccacccaaattgacactagagggaatcaaacctgagaccttgaggaggagca 44780143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 33727835 - 33727902
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||||| | || |||||||||||||||||||||||||| |||| ||||||| ||||||||    
T  33727835 aagaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagca 33727902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 27750844 - 27750777
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||   || |||||||||||||||||||||||||| |||| ||||||| ||||||||    
T  27750844 aagaagctaaattagtccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagca 27750777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 31408084 - 31408151
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||||||| | |  ||||||||| ||||| |||||||| |||||||||||| ||||||||    
T  31408084 aagaagctaaattaacccccttaaattgacattagagagaatcgaacctgaaaccttgaggaggagca 31408151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 6536635 - 6536567
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||||| |||| |||||| ||| |||| |||| ||| |||| ||||||| ||||||||    
T  6536635 gaagaagctaaattaacccacctaaattggcaccagagagaattgaacctgagaccttgaggaggagca 6536567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 43594280 - 43594344
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagagga 75  Q
    ||||| |||||||| | || ||||||||||||||||| |||||||| |||| ||||||| |||||    
T  43594280 aagaaactaaattagcccatccaaattgacactagagagaatcgaacctgagaccttgaggagga 43594344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 13129779 - 13129716
Alignment:
Q  14 aagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagc 77  Q
    ||||||||||||  || |||||||| ||| |||| |||||||| |||||||||||| |||||||    
T  13129779 aagctaaattaatccatccaaattggcaccagagagaatcgaacctgaaaccttgaggaggagc 13129716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 7347952 - 7347896
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaacct 66  Q
    ||||||||||||||| | |||| |||||||||| |||| |||| ||| |||||||||    
T  7347952 gaagaagctaaattagcccacctaaattgacacaagagagaattgaacctgaaacct 7347896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 13456495 - 13456531
Alignment:
Q  33 aaattgacactagagggaatcgaatctgaaaccttga 69  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  13456495 aaattgacactagagagaatcgaatctgagaccttga 13456531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 43471214 - 43471250
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagag 47  Q
    |||||||||||||| |||||||||||||||| |||||    
T  43471214 aagaagctaaattatctcacccaaattgacagtagag 43471250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 20213156 - 20213088
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||| |||| || |||| ||||||||    
T  20213156 gaagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagacattgaggaggagca 20213088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 22107179 - 22107111
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||| |||| || |||| ||||||||    
T  22107179 gaagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagacattgaggaggagca 22107111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 14199909 - 14199976
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||   ||||||||||||||||||| |||||||||||||| ||||||| ||||||||    
T  14199909 aagaagctaaattagtccacccaaattgacactagaaggaatcgaatctgagaccttgaggaggagca 14199976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 21050556 - 21050494
Alignment:
Q  241 ctaaaccttttgaagccaatttatctgcacacctatttccttctatgtagatatgagttacaa 303  Q
    |||| |||||||||||||| ||||||||||||||||| |||||| | || |||||||||||||    
T  21050556 ctaatccttttgaagccaacttatctgcacacctattaccttctttataaatatgagttacaa 21050494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 12188264 - 12188332
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||| |||| | | ||||||| |||||||| ||||||||  ||||||||||| ||||||||    
T  12188264 gaagaagctaaactaaccccctcaaattggcactagagagaatcgaacttgaaaccttgaggaggagca 12188332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 665131 - 665170
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagaggga 50  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  665131 aagaagttaaattaactcacccaaattgacaccagaggga 665170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 13330201 - 13330135
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagc 77  Q
    ||||||||||| |||| | | ||||||| ||| |||| ||||||||||||| ||||||| |||||||    
T  13330201 aagaagctaaactaaccctctcaaattggcacaagagagaatcgaatctgagaccttgaggaggagc 13330135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 17328243 - 17328293
Alignment:
Q  28 cacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||| |||  |||| |||||||| |||||||||||||||||||||    
T  17328243 cacccaaattaacatcagagagaatcgaacctgaaaccttgaagaggagca 17328293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 1992209 - 1992254
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaa 56  Q
    |||||||||||||| | |||| ||||||||||||||| ||||||||    
T  1992209 aagaagctaaattagcacacctaaattgacactagagagaatcgaa 1992254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 3172733 - 3172797
Alignment:
Q  14 aagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||| | |||||||||| |||||| ||  |||||||||||| |||| || ||||||||    
T  3172733 aagctaaattagcccacccaaattaacactaaagaaaatcgaatctgagacctcgatgaggagca 3172797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 10338139 - 10338203
Alignment:
Q  14 aagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||| ||||  ||| |||||||| | |||||||||| |||| ||||||| ||||||||    
T  10338139 aagctaaattagctcaatcaagttgacactggggggaatcgaacctgagaccttgaggaggagca 10338203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 11306135 - 11306203
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||| |||| | | ||||||| ||| |||| |||||||| |||| |||||||||| |||||    
T  11306135 gaagaagctaaactaaccccctcaaattggcaccagagagaatcgaacctgagaccttgaagatgagca 11306203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 28364044 - 28363984
Alignment:
Q  18 taaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||| | || |||||||||||| ||||  |||||||||||| ||||||| ||||||||    
T  28364044 taaattagcccatccaaattgacaccagagataatcgaatctgagaccttgaggaggagca 28363984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 31282557 - 31282525
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacac 42  Q
    ||||||||||||||| |||||||||||||||||    
T  31282557 gaagaagctaaattagctcacccaaattgacac 31282525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 21195638 - 21195705
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||||| | || |||||||||||||||||||||||||| |||| ||||||| ||||||||    
T  21195638 aagaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagca 21195705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 21303955 - 21304023
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||||| | | ||||||||||| |||| |||||||| |||||||||| | ||||||||    
T  21303955 gaagaagctaaattaaccccctcaaattgacaccagagagaatcgaacctgaaaccttcaggaggagca 21304023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 6859274 - 6859341
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||| ||||||||| || |||||| ||||| |||||||| |||| || |||||||||||||    
T  6859274 aagaagctaaactaactcacctaagttgacattagagagaatcgaacctgagactttgaagaggagca 6859341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 1435178 - 1435111
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| | ||||||||||||||| |||| |||||||| |||| ||||||| ||| ||||    
T  1435178 gaagaagctaaattagcccacccaaattgacaccagagagaatcgaa-ctgagaccttgaggagaagca 1435111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 12497744 - 12497811
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||||||  |||||||| |   ||||||| ||||||||||||| ||||||| ||||||||    
T  12497744 aagaagctaaattaatccacccaaaatagtactagagagaatcgaatctgagaccttgaggaggagca 12497811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 25931121 - 25931070
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctga 61  Q
    |||||| ||||||||||||| |||||||||||| | || |||||||||||||    
T  25931121 gaagaaactaaattaactcatccaaattgacaccaaagagaatcgaatctga 25931070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 23230566 - 23230634
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||| ||||||| |||| ||||||||||||| ||| |||| ||| ||| ||| |||| ||||||||    
T  23230566 gaagaagttaaattagctcatccaaattgacactggagagaattgaacctggaactttgaggaggagca 23230634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 34041549 - 34041617
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||| |||| | | ||||||| ||| |||||||||| || |||| ||||||| ||||||||    
T  34041549 gaagaagctaaactaaccccctcaaattggcaccagagggaatcaaacctgagaccttgaggaggagca 34041617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 39765044 - 39764992
Alignment:
Q  14 aagctaaattaactcacccaaattgacactagagggaatcgaatctgaaacct 66  Q
    ||||||||||| | || | |||||||||||||||||||||||| |||| ||||    
T  39765044 aagctaaattagcccagctaaattgacactagagggaatcgaacctgagacct 39764992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 17028225 - 17028293
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| | |||| ||||||||||||||||||||| || |||| ||||||| ||||||||    
T  17028225 gaagaagctaaattagcccacctaaattgacactagagggaatcaaacctgagaccttgaggaggagca 17028293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 28285367 - 28285299
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| | |||||||||||||||||||  |||||||| | || ||||||| ||||||||    
T  28285367 gaagaagctaaattagcccacccaaattgacactagaaagaatcgaacccgataccttgaggaggagca 28285299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 37258328 - 37258395
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||| |||| | | ||||||||||| |||| |||||||| |||||||||||| ||||||||    
T  37258328 aagaagctaaactaaccccctcaaattgacaccagagagaatcgaacctgaaaccttgaggaggagca 37258395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 18206608 - 18206663
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaacct 66  Q
    |||||||||||||| | ||||||||||| |||||||| || ||||||||| |||||    
T  18206608 aagaagctaaattagcccacccaaattggcactagagagagtcgaatctggaacct 18206663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 29173604 - 29173537
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||||| | |||| |||||||||| ||||  ||||||| ||||||||| || ||||||||    
T  29173604 aagaagctaaattagcccacctaaattgacaccagagataatcgaacctgaaacctcgaggaggagca 29173537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 27596442 - 27596376
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggag 76  Q
    ||||||||||||||||||||| ||| ||||||  |||| ||||||||||| | |||| || ||||||    
T  27596442 gaagaagctaaattaactcactcaagttgacaacagagagaatcgaatctaagacctcgaggaggag 27596376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 5156090 - 5156143
Alignment:
Q  14 aagctaaattaactcacccaaattgacactagagggaatcgaatctgaaacctt 67  Q
    ||||||||||||| | | ||||||||||| |||| ||||||||||||| |||||    
T  5156090 aagctaaattaaccctctcaaattgacaccagagagaatcgaatctgagacctt 5156143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 11352097 - 11352052
Alignment:
Q  11 aagaagctaaattaactcacccaaattgacactagagggaatcgaa 56  Q
    |||||| |||||||||||| ||||||||||||| ||| ||||||||    
T  11352097 aagaagataaattaactcatccaaattgacactggagagaatcgaa 11352052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 22737197 - 22737129
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||||| |||| ||||||| |  ||||||||||||| |||| || |||  ||||||||    
T  22737197 gaagaagctaaattaacccacctaaattgatatcagagggaatcgaacctgagacattggggaggagca 22737129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 25627171 - 25627104
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||||||||| |||| | | ||||||||||| |||| |||||||| |||| ||||||| ||||||||    
T  25627171 gaagaagctaaactaaccc-ctcaaattgacaccagagagaatcgaacctgagaccttgaggaggagca 25627104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 35796580 - 35796648
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||| ||||||||| |  ||| |||||||||| ||||||||||||| |||||| | ||| ||||||||    
T  35796580 gaagatgctaaattagcctacctaaattgacacaagagggaatcgaacctgaaatcatgaggaggagca 35796648  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 43442311 - 43442243
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    |||||| |||||||| | || |||||||||||  |||| |||||||| |||| ||||||| ||||||||    
T  43442311 gaagaaactaaattagcccatccaaattgacaacagagagaatcgaacctgagaccttgaggaggagca 43442243  T

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Target: scaffold0300 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 4455 - 4398
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaacctt 67  Q
    |||||||||||||||   ||||||||||||||||||||||||||||| || |||||||    
T  4455 gaagaagctaaattagtccacccaaattgacactagagggaatcgaacctaaaacctt 4398  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 18413 - 18346
Alignment:
Q  10 gaagaagctaaattaactcacccaaattgacactagagggaatcgaatctgaaaccttgaagaggagca 78  Q
    ||||||||||||||| | ||| ||||||| ||| |||| ||||| || |||||||||||| ||||||||    
T  18413 gaagaagctaaattagc-cactcaaattggcaccagagagaatcaaacctgaaaccttgaggaggagca 18346  T

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