View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_39 (Length: 328)
Name: NF18278_low_39
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 27194896 - 27195201
Alignment:
| Q |
1 |
aggcttttaaaagctacttttccaagatgccatggttggctatcccgttttctgattctgagacacgcagtcgccttgatgaattgtttcatgtcaacgg |
100 |
Q |
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| T |
27194896 |
aggcttttaagagctacttttccaagatgccatggctagctatcccattttctgattcagagacacgcggtcgccttgatgaattgtttcatgtcaacgg |
27194995 |
T |
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| Q |
101 |
aattcctcatcttgcactgcttgatgaagctggaaaagttattactgaagatggagttgacattatccgtgatcatggaactgaaggataccctttcaca |
200 |
Q |
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| T |
27194996 |
aattcctcatcttgcattgcttgatgaagctggaaaagttattactgaagatggagttgacattatccgtgtttatggagctgaagcataccctttcaca |
27195095 |
T |
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| Q |
201 |
tcagaaagggttcaagagttgaaagatatagaagaggaagctaagaggaaccagtccttgagatcgatattggcctctcgttcccgtgactttctgatat |
300 |
Q |
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| T |
27195096 |
tcaaaaagggttcaagagttgaaagatatagaagaggaagctaagaggaaccagtccttgagatcgatattggcctctcgttcccgtgactttctgatat |
27195195 |
T |
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| Q |
301 |
catccg |
306 |
Q |
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|||||| |
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| T |
27195196 |
catccg |
27195201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 27210138 - 27210430
Alignment:
| Q |
14 |
ctacttttccaagatgccatggttggctatcccgttttctgattctgagacacgcagtcgccttgatgaattgtttcatgtcaacggaattcctcatctt |
113 |
Q |
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| T |
27210138 |
ctacttttccaagatgccatggctggctatcccattttctgactcagagatacgcattcgcctcaaagaattgtttcatgtaaaaggcattcctcatctt |
27210237 |
T |
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| Q |
114 |
gcactgcttgatgaagctggaaaagttattactgaagatggagttgacattatccgtgatcatggaactgaaggataccctttcacatcagaaagggttc |
213 |
Q |
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||| |||| ||||| ||||||||||| |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |
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| T |
27210238 |
gcattgctcgatgatactggaaaagttgttactgaagacggagttcacattatccgtgaatatggaactgaaggataccctttcacatcaaaaaaggttc |
27210337 |
T |
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| Q |
214 |
aagagttgaaagatatagaagaggaagctaagaggaaccagtccttgagatcgatattggcctctcgttcccgtgactttctgatatcatccg |
306 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| | | |||||||||| |||||||||||| |
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| T |
27210338 |
aagagttgaaagatatagaagaggaagctatgaggaaccagtccttgagatcgacattggtctctagctaccgtgactttgtgatatcatccg |
27210430 |
T |
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