View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18278_low_4 (Length: 763)
Name: NF18278_low_4
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 586; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 118 - 747
Target Start/End: Original strand, 37147320 - 37147949
Alignment:
| Q |
118 |
tatatttcacattttccctctgtagctgtttgtgtaactattgtggtgtaaggtttgatagaatgaagaaggttatgctgaggttattgggattttaatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37147320 |
tatatttcacattttccctctgtagctgtttgtgtaactattgtggtgtaaggtttgatagaatgaagaaggttatgctgaggttattgggattttaatt |
37147419 |
T |
|
| Q |
218 |
tatataatacttggatgcaggtccttcttagaggcccaaaaaatgctcgtgaagcagtgaggcactttggtcgtgctcctggtgtcccacaaagccacac |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37147420 |
tatataatacttggatgcaggttcttcttagaggcccaaagaatgctcgtgaagcagtgaagcactttggtcgtgctcctggtgtcccacaaagccacac |
37147519 |
T |
|
| Q |
318 |
caaaccttatgttagaggaaagtcaaggaagatcgagaaggctagaggaaagaggacgagcagaggattcagagtttgatgtgatagtatttctttgctg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37147520 |
caaaccttatgttagaggaaagtcaaggaagatcgagaaggctagaggaaagaggaagagcagaggattcagagtttgatgtgatagtatttctttgctg |
37147619 |
T |
|
| Q |
418 |
gtattattacttttgaaattcagattttgtctacatctagacagtgttgttatttatgtttgataatgatttttagtatggagattttattccttgctcc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37147620 |
gtattattacttttgaaattcagattttgtctacatctaaacagtgttgttatttatgtttgataatgattttcagtatggagattttattccttgctcc |
37147719 |
T |
|
| Q |
518 |
cttattttctgtggttgtgttttgtgttgccttagttacagttttgatgttagagaatgggcagttgttaattaaggatgcatggttatgcgttgtgaaa |
617 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
37147720 |
cttattttctgtggttgtgttttgtgtcgccttagttacagttttgatgttagagaatgggtagttgttaattaaggatgcatggttgtgcattgtgaaa |
37147819 |
T |
|
| Q |
618 |
ttcaaacatgttatggtgcttggctagattttctaaattacatttgcaagtagttttgttcggaaattcaatcccacttcatttccgccaccgttttgaa |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37147820 |
ttcaaacatgttatggtgcttggctagattttctaaattacatttgcaagtagttttgttcggaaattcaatcccacttcatttccgccactgttttgaa |
37147919 |
T |
|
| Q |
718 |
accaaacagagctcaagtctgtctgattat |
747 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
37147920 |
accaaacagagctcaagtctgtctgattat |
37147949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 37147256 - 37147319
Alignment:
| Q |
77 |
aagatcaaagttatacttttggattctttattgtggtcaaatatatttcacattttccctctgt |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37147256 |
aagatcaaagttatacttttggattctttattgtggtcaaatatatttcacattttccctctgt |
37147319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 37147164 - 37147251
Alignment:
| Q |
52 |
aatctttgcttagaattaaccgaacaagatcaaagttatacttttggattctttattgtggtc---aaatatatttcacattttccct |
136 |
Q |
| |
|
|||||||||||| ||||||| | | |||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37147164 |
aatctttgcttaaaattaactgtcaaggatcaatgttatacttttgtgttctttattgtggtcgaataatatatttcacattttccct |
37147251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37147242 - 37147275
Alignment:
| Q |
1 |
cattttccctgtttaagatcaaagttatactttt |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
37147242 |
cattttccctgtttaagatcaaagttatactttt |
37147275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 567; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 118 - 747
Target Start/End: Complemental strand, 90711 - 90084
Alignment:
| Q |
118 |
tatatttcacattttccctctgtagctgtttgtgtaactattgtggtgtaaggtttgatagaatgaagaaggttatgctgaggttattgggattttaatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
90711 |
tatatttcacattttccctctgtagctgtttgtgtaactattgtagtgtaatgtttgatagaatgaagaaggttatgctgaggttatcgggattttattt |
90612 |
T |
|
| Q |
218 |
tatataatacttggatgcaggtccttcttagaggcccaaaaaatgctcgtgaagcagtgaggcactttggtcgtgctcctggtgtcccacaaagccacac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
90611 |
tatataatacttggatgcaggtccttcttagaggcccaaagaatgctcgtgaagcagtgaagcactttggtcgtgctcctgttgtcccacaaagccacac |
90512 |
T |
|
| Q |
318 |
caaaccttatgttagaggaaagtcaaggaagatcgagaaggctagaggaaagaggacgagcagaggattcagagtttgatgtgatagtatttctttgctg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
90511 |
caaaccttatgttagaggaaagtcaaggaagatcgagaaggctagaggaaagaggaagagcagaggattcagagtttgatgtgatagtatttctttgctg |
90412 |
T |
|
| Q |
418 |
gtattattacttttgaaattcagattttgtctacatctagacagtgttgttatttatgtttgataatgatttttagtatggagattttattccttgctcc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
90411 |
gtattattacttttgaaattcagattttgtctacatctagacagtgttgttatttatgtttgataatgattttcagtatgaagattttattccttgctcc |
90312 |
T |
|
| Q |
518 |
cttattttctgtggttgtgttttgtgttgccttagttacagttttgatgttagagaatgggcagttgttaattaaggatgcatggttatgcgttgtgaaa |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
90311 |
cttattttctgtggttgtgttttgtgttgctttagttacagttttgatgttagagaatgggtagttgttaattaaggatgcatgcttatgcgttgtgaaa |
90212 |
T |
|
| Q |
618 |
ttcaaacatgttatggtgcttggctagattttctaaattacatttgcaagtagttttgttcggaaattcaatcccacttcatttccgccaccgttttgaa |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
90211 |
ttcaaacatgttatggtgcttggctagattttctaaattacatttgcaagtagttttgttcggaaattcaatcccacttcatttccgccaccgttttgaa |
90112 |
T |
|
| Q |
718 |
accaaacagagctcaagtctgtctgattat |
747 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
|
|
| T |
90111 |
accaaac--agctcaagtctgtctgattat |
90084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 118 - 368
Target Start/End: Complemental strand, 94015 - 93765
Alignment:
| Q |
118 |
tatatttcacattttccctctgtagctgtttgtgtaactattgtggtgtaaggtttgatagaatgaagaaggttatgctgaggttattgggattttaatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
94015 |
tatatttcacattttccctctgtagctgtttgtgtaactattgtagtgtaaggtttgatagaatgaagaaggttatgctgaggttatcgggattttaatt |
93916 |
T |
|
| Q |
218 |
tatataatacttggatgcaggtccttcttagaggcccaaaaaatgctcgtgaagcagtgaggcactttggtcgtgctcctggtgtcccacaaagccacac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
93915 |
tatataatacttggatgcaggtccttcttagaggcccaaagaatgctcgtgaagcagtgaagcactttggtcgtgctcctggtgtcccacaaagccacac |
93816 |
T |
|
| Q |
318 |
caaaccttatgttagaggaaagtcaaggaagatcgagaaggctagaggaaa |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
93815 |
caaaccttatgttagaggaaagtcaaggaagatcgagaaggctagacgaaa |
93765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 90851 - 90712
Alignment:
| Q |
1 |
cattttccctgtttaagatcaaagttatacttttatctgtacattttcctaaatctttgcttagaattaaccgaacaagatcaaagttatacttttggat |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
90851 |
cattttctctgtttaagatcaaagttatacttttatctgtacattttcctaaatctttgcttagaattaaccgaacaagatcaaagttatacttttggat |
90752 |
T |
|
| Q |
101 |
tctttattgtggtcaaatatatttcacattttccctctgt |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
90751 |
tctttattgtggtcaaatatatttcacattttccctctgt |
90712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 94155 - 94016
Alignment:
| Q |
1 |
cattttccctgtttaagatcaaagttatacttttatctgtacattttcctaaatctttgcttagaattaaccgaacaagatcaaagttatacttttggat |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
94155 |
cattttctctgttgaagatcaaagttatacttttatctgtgcattttcctaaatctttgcttagaattaaccgaacaagatcaaagttatacttttggat |
94056 |
T |
|
| Q |
101 |
tctttattgtggtcaaatatatttcacattttccctctgt |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
94055 |
tctttattgtggtcaaatatatttcacattttccctctgt |
94016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 90929 - 90845
Alignment:
| Q |
52 |
aatctttgcttagaattaaccgaacaagatcaaagttatacttttggattctttattgtggtc---aaatatatttcacattttc |
133 |
Q |
| |
|
|||||||||||| ||||||| | | |||||| |||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
90929 |
aatctttgcttaaaattaactgtcaaggatcaatgttatacttttgtgttctttattgtggtcgaataatatatttcacattttc |
90845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 94233 - 94149
Alignment:
| Q |
52 |
aatctttgcttagaattaaccgaacaagatcaaagttatacttttggattctttattgtggtc---aaatatatttcacattttc |
133 |
Q |
| |
|
|||||||||||| ||||||| | | |||||| |||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
94233 |
aatctttgcttaaaattaactgtcaaggatcaatgttatacttttgtgttctttattgtggtcgaataatatatttcacattttc |
94149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 235 - 396
Target Start/End: Original strand, 46455513 - 46455674
Alignment:
| Q |
235 |
caggtccttcttagaggcccaaaaaatgctcgtgaagcagtgaggcactttggtcgtgctcctggtgtcccacaaagccacaccaaaccttatgttagag |
334 |
Q |
| |
|
|||||||| || ||||||||||| |||||| | |||||||| | ||||||||||||||||||||||| ||||| ||||| |||| || ||||| ||| |
|
|
| T |
46455513 |
caggtcctactaagaggcccaaagaatgctagggaagcagtaaaacactttggtcgtgctcctggtgtgccacacagccattccaagccgtatgtaagat |
46455612 |
T |
|
| Q |
335 |
gaaagtcaaggaagatcgagaaggctagaggaaagaggacgagcagaggattcagagtttga |
396 |
Q |
| |
|
|||| |||||| ||||| || ||||||||||||| ||| |||||||| || |||||| |
|
|
| T |
46455613 |
caaagggaaggaaacaagagaaagccagaggaaagaggaagagtagaggatttagggtttga |
46455674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 44440090 - 44440172
Alignment:
| Q |
235 |
caggtccttcttagaggcccaaaaaatgctcgtgaagcagtgaggcactttggtcgtgctcctggtgtcccacaaagccacac |
317 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| || || | |||||| || || ||||||||||| ||||| ||| |||| |
|
|
| T |
44440090 |
caggttcttcttagaggtcccaaaaatgctcgtgaggctgtcaagcacttcggacgagctcctggtgtgccacacagcaacac |
44440172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University