View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18278_low_42 (Length: 310)
Name: NF18278_low_42
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_42 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 33698158 - 33698465
Alignment:
| Q |
7 |
tcgaagaatatgggaaaggtttaattaatgaaaaagtactaaataattgatagtgccaaattgcaatgcaacaactctttaaactatgtccaggccagac |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33698158 |
tcgaagaaaatgggaaaggtttaattaatgaaaaagtgctaaataattgatagtgccaaattgcaatgcaacaactctttaaactatgtccaggccagac |
33698257 |
T |
|
| Q |
107 |
atatgtatttaaactatgtccagacatatatctttttaat----actattagaagtattatgttaagggtgtgaaatgtaaatattgaattttcaacctc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33698258 |
atatgtatttaaactatgtccagacatatttctttttaatagtaaatattagaagtattatgttaagggtgtgaaatgtaaatattgaattttcaacctc |
33698357 |
T |
|
| Q |
203 |
tttatcactttaannnnnnnattcctcaacacaagtaagtactaccaaatcaacatgtctcttgaatgtgaacattctactaatgaataatgaatgataa |
302 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
33698358 |
tttatcactataatttttttattcctcaacacaagtaagtactaccaaatcaacatgtctcttgaatgtaaacatgctactaatgaataatgaatgataa |
33698457 |
T |
|
| Q |
303 |
ccggtaaa |
310 |
Q |
| |
|
|||||||| |
|
|
| T |
33698458 |
ccggtaaa |
33698465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 33689873 - 33689937
Alignment:
| Q |
190 |
aattttcaacctctttatcactttaannnnnnnattcctcaacacaagtaagtactaccaaatca |
254 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
33689873 |
aattttcaacctctttatcactataatttttaaattccacaacacaattaagtactaccaaatca |
33689937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 82776 - 82650
Alignment:
| Q |
114 |
tttaaactatgtccagacatatatctttttaatacta----ttagaagtattatgttaagggtgtgaaatgtaaatattgaattttcaacctctttatca |
209 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| || ||||||||| ||||| ||||||||| ||||| |||||||||| |||||||||| |
|
|
| T |
82776 |
tttaaactatgtccagacatatttctttttaatagtagatgttagaagtactatgtaaagggtgtg-------aatatcgaattttcaatctctttatca |
82684 |
T |
|
| Q |
210 |
ctttaannnnnnnattcctcaacacaagtaagta |
243 |
Q |
| |
|
|| ||| ||||||||||||||||||||| |
|
|
| T |
82683 |
ctataattttttaattcctcaacacaagtaagta |
82650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University