View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_45 (Length: 298)
Name: NF18278_low_45
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 34680990 - 34680730
Alignment:
| Q |
12 |
cattgatcacctaatctcatgtttttatgaattttttataattggatcaacatgggccattaggccatataattagactctaataccatgttggattttt |
111 |
Q |
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| T |
34680990 |
cattgatcacctaacctcatgtttttatgaattttttataattggatcaacatgggccattaggccatataattagactctaataccatgttggattttt |
34680891 |
T |
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| Q |
112 |
ggcacaaaccaatcaataaggagtgtgcgcaatataaattagtgtacttgcgtaggatttgggttcattctctcatatattagcacatacaagactttat |
211 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34680890 |
ggcacaaaccaatcagtaaggagtgtgcgcaatataaattagtgtacatgcgtaggatttgggttcattctctcatatattagcacatacaagactttat |
34680791 |
T |
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| Q |
212 |
agttttccattcaacatcaaaatactccaaccaaatagttggtcatgatggtggctgtttta |
273 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34680790 |
ag-tttccattcaacatcaaaatactccaaccaaatagttggtcatgatggtggctgtttta |
34680730 |
T |
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