View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_50 (Length: 283)
Name: NF18278_low_50
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_50 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 42146983 - 42147255
Alignment:
| Q |
1 |
gtccatgtgtccaaattcccaactctttcaatctctcatcaacttcattttttatgagatcaagttatagagcttcaaaatacgggaattgaaacaattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
42146983 |
gtccatgtgtccaaattcccaactctttcaatctctcatcaacttcattttttatgagatcaagttatggagcttcaaaatacgggaatcgaaacaattc |
42147082 |
T |
|
| Q |
101 |
catgatagttgtattcaaactatggagctcaaaggtaacnnnnnnnnnnnnnctgtggagtttaaagaaagaaagaaag-----aaatgaatgatgcact |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
42147083 |
catgatagttgtattcaaactatggagctcaaaggtaacaaaaaaaaaaaaactgtggagcttaaagaaagaaagaaagaaagaaaatgaatgatgcact |
42147182 |
T |
|
| Q |
196 |
ttcagatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaacaattccatggttgttgt |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42147183 |
ttcagatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaacaattccatggttgttgt |
42147255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 51492321 - 51492050
Alignment:
| Q |
1 |
gtccatgtgtccaaattcccaactctttcaatctctcatcaacttcattttttatgagatcaagttatagagcttcaaaatacgggaattgaaacaattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||| | |
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| T |
51492321 |
gtccatgtgtccaaattcccaactctttcaatctctcatcaacttcattttttatgagat-aagttatggagcatcaaaatacgggaattgaaacaatgc |
51492223 |
T |
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| Q |
101 |
catgatagttgtattcaaactatggagctcaaaggt----aacnnnnnnnnnnnnnctgtggagtttaaagaaagaaagaaag-aaatgaatgatgcact |
195 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| |||||||||||||| | |
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| T |
51492222 |
catgatagttgtattcaaactatggagctcaaaggtagcaaaaaataaaagaaaaattgtggagcttaaagaaagaaagaaagaaaatgaatgatgcagt |
51492123 |
T |
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| Q |
196 |
ttcagatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaacaattccatggttgttgt |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51492122 |
ttcagatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaacaattccatggttgttgt |
51492050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 67854 - 67588
Alignment:
| Q |
1 |
gtccatgtgtccaaattcccaactctttcaatctctcatcaacttcattttttatgagatcaagttatagagcttcaaaatacgggaattgaaacaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |
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| T |
67854 |
gtccatgtgtccaaattcccaactctttcaatctctcatcaacttcattttttatgagatcaagttatggagcttcaaaatacgggaatcgaaactattc |
67755 |
T |
|
| Q |
101 |
catgatagttgtattcaaactatggagctcaaaggtaacnnnnnnnnnnnnnctgtggagtttaaagaaagaaagaaag-aaatgaatgatgcactttca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
67754 |
catgatagttgtattcaaactatggagctcaaaggtaac--aaaaaaaaaaactgtggagcttaaagaaagaaagaaagaaaatgaatgatgcactttca |
67657 |
T |
|
| Q |
200 |
gatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaacaattccatggttgttgt |
268 |
Q |
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| T |
67656 |
gatgatatggaaatttaaatttaattcattgagataatttcaaaatttaaacaattccatggttgttgt |
67588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 15374142 - 15374412
Alignment:
| Q |
1 |
gtccatgtgtccaaattcccaactctttcaatctctcatcaacttcattttttatgagatcaagttatagagcttcaaaatacgggaattgaaacaattc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| |
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| T |
15374142 |
gtccatgtgtccaaattcccaactctttcaatctctcatcaacttcattttttatgagctcaagttatggagcttcaaaatacgggaatcgaaacaattc |
15374241 |
T |
|
| Q |
101 |
catgatagttgtattcaaactatggagctcaaaggtaac--nnnnnnnnnnnnnctgtggagtttaaagaaagaaagaaag-aaatgaatgatgcacttt |
197 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
15374242 |
catgatagttgtattcaaactatggagctcaaaggtaacaaaaaaaaaaaaaaactgtggagcttaaagaaagaaagaaagaaaatgaatgatgcacttt |
15374341 |
T |
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| Q |
198 |
cagatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaacaattccatggttgttgt |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15374342 |
cagatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaacaattccatggttgttgt |
15374412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 46358475 - 46358219
Alignment:
| Q |
1 |
gtccatgtgtccaaattcccaactctttcaatctctcatcaacttcattttttatgagatcaagttatagagcttcaaaatacgggaattgaaacaattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46358475 |
gtccatgtgtccaaattcccaactctttcaatctctc--------------ttatgagatcaagttatggagcttcaaaatacgggaattgaaacaattc |
46358390 |
T |
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| Q |
101 |
catgatagttgtattcaaactatggagctcaaaggtaacnnnnnnnnnnnnn------ctgtggagtttaaagaaagaaagaaagaaa-tgaatgatgca |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
46358389 |
catgatagttgtattcaaactatggagctcaaaggtaacaaaaaaaaaaaaaaaaaaactgtggagcttaaagaaagaaagaaagaaaatgaatgatgca |
46358290 |
T |
|
| Q |
194 |
ctttcagatgatatgggaatttaaatttaattcattgagataatttcaaaatttaaacaattccatggttgttgt |
268 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46358289 |
ctttcagatgatatgggaatttaaattta----attgagataatttcaaaatttaaacaattccatggttgttgt |
46358219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 9379659 - 9379415
Alignment:
| Q |
1 |
gtccatgtgtccaaattcccaactctttcaatctctcatcaacttcattttttatgagatcaagttatagagcttcaaaatacgggaattgaaacaattc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
9379659 |
gtccatgcgtccaaattcccaactctttcaatctctcatcaacttcattttttatgagatcaagttatggagcttcaaaatacgggaagtgaaacaattc |
9379560 |
T |
|
| Q |
101 |
catgatagttgtattcaaactatggagctcaaaggtaacnnnnnnnnnnnnnctgtggagtttaaagaaagaaagaaag-aaatgaatgatgcactttca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| |||||||||||| ||||||| |
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| T |
9379559 |
catgatagttgtattcaaactatggagctcaaaggtaacaaaaaaaaaaaaaccgtggagcttaaagaaagaaagaaagaaaatgaatgatgtactttca |
9379460 |
T |
|
| Q |
200 |
gatgatatgggaatttaaatttaattcattgagataatttcaaaa |
244 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9379459 |
gatgatatgagaatttaaatttaattcattgagataatttcaaaa |
9379415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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