View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18278_low_53 (Length: 273)

Name: NF18278_low_53
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18278_low_53
NF18278_low_53
[»] chr8 (3 HSPs)
chr8 (1-72)||(32668563-32668634)
chr8 (224-257)||(32668775-32668808)
chr8 (88-125)||(32668639-32668676)
[»] chr4 (4 HSPs)
chr4 (12-64)||(20752464-20752515)
chr4 (13-52)||(17951061-17951100)
chr4 (13-52)||(17954913-17954952)
chr4 (13-64)||(18765569-18765620)


Alignment Details
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 32668563 - 32668634
Alignment:
Q  1 atatttaacagtatttaatagaatgcattaaatacttttcatttatattataattttcttcatttaactata 72  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  32668563 atatttaacagtatttaatagaattcattaaatacttttcatttatataataattttattcatttaactata 32668634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 32668775 - 32668808
Alignment:
Q  224 ttgttgactggtttttaataatttttattgatat 257  Q
    ||||||||||||||||||||||||||||||||||    
T  32668775 ttgttgactggtttttaataatttttattgatat 32668808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 32668639 - 32668676
Alignment:
Q  88 ctttggttaaatattcaatctctagaacttaatagaag 125  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  32668639 ctttggtcaaatagtcaatctctagaacttaatagaag 32668676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 20752515 - 20752464
Alignment:
Q  12 tatttaatagaatgcattaaatacttttcatttatattataattttcttcatt 64  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  20752515 tatttaatagaatgtattaaatacttttcatttata-tataattttgttcatt 20752464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 17951100 - 17951061
Alignment:
Q  13 atttaatagaatgcattaaatacttttcatttatattata 52  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  17951100 atttaatagaatatattaaatacttttcatttatattata 17951061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 17954952 - 17954913
Alignment:
Q  13 atttaatagaatgcattaaatacttttcatttatattata 52  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  17954952 atttaatagaatatattaaatacttttcatttatattata 17954913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 18765569 - 18765620
Alignment:
Q  13 atttaatagaatgcattaaatacttttcatttatattataattttcttcatt 64  Q
    ||||||||||||| |||||||||||||| |||||| |||| |||| ||||||    
T  18765569 atttaatagaatgtattaaatacttttcgtttatactatatttttgttcatt 18765620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University