View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18278_low_55 (Length: 269)

Name: NF18278_low_55
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18278_low_55
NF18278_low_55
[»] chr6 (18 HSPs)
chr6 (1-250)||(31566595-31566845)
chr6 (1-170)||(33306927-33307095)
chr6 (1-166)||(33390518-33390682)
chr6 (1-170)||(33642088-33642256)
chr6 (1-170)||(33288016-33288184)
chr6 (1-240)||(33402985-33403220)
chr6 (1-174)||(9169295-9169467)
chr6 (1-167)||(33412362-33412527)
chr6 (1-170)||(33059996-33060164)
chr6 (1-169)||(33360940-33361107)
chr6 (1-170)||(33265323-33265491)
chr6 (1-170)||(33274467-33274635)
chr6 (1-37)||(12781322-12781358)
chr6 (1-37)||(12785512-12785548)
chr6 (194-246)||(33642282-33642334)
chr6 (135-172)||(12781939-12781976)
chr6 (1-37)||(12786252-12786288)
chr6 (198-250)||(33287930-33287982)
[»] chr2 (1 HSPs)
chr2 (1-170)||(17438160-17438328)
[»] scaffold1749 (1 HSPs)
scaffold1749 (9-170)||(587-747)
[»] scaffold0428 (1 HSPs)
scaffold0428 (9-170)||(9348-9508)
[»] chr4 (10 HSPs)
chr4 (1-165)||(31496427-31496590)
chr4 (1-165)||(31501597-31501760)
chr4 (1-172)||(31476487-31476657)
chr4 (59-172)||(31162091-31162201)
chr4 (1-172)||(31489072-31489242)
chr4 (1-166)||(31020316-31020480)
chr4 (1-166)||(31030197-31030361)
chr4 (41-172)||(31150814-31150944)
chr4 (1-68)||(31482326-31482393)
chr4 (1-86)||(31529056-31529141)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 31566595 - 31566845
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31566595 atgatgttgatccttctgaggttcgaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 31566694  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagtaatctatc--annnnnnnnnngttgtacaaatt 198  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||             ||||||||||||    
T  31566695 aagatggagagaagctctaaaacaagtggc-gagtatctttggttgggatctacgtgataagtaagtaatctatctttttttttttttgttgtacaaatt 31566793  T
Q  199 ataaggtgaagggatggtgcacgagtccatgacagaaactcaaagagtactt 250  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31566794 ataaggtgaagggatggtgcacgagtccatgacagaaattcaaagagtactt 31566845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 33307095 - 33306927
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||||| | ||||||||||    
T  33307095 atgatgttgatccttctgtggttcgaaagcaaagtgggatttattgtgaagcctttgtcaaacatgaacaaagattccaacaagactttgagatggtgtc 33306996  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagtaat 170  Q
    ||||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||    
T  33306995 aagatggagggaagctctaaaacatgtgg-ggagtatctctggttgggatctacgtgataagtaagtaat 33306927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 33390682 - 33390518
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    |||||||||||||||||||||||| |||||||||||| ||||||  | ||||||||| |||||||||||||||||||| |||| ||||||||||||||||    
T  33390682 atgatgttgatccttctgaggttcgaaagcaaagtggaatttatgataaagcttttgtcaaacatgaacaaagattccaacaaaactctcagatggtgtc 33390583  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaag 166  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  33390582 aagatggagagaagctctaaaacaagtgg-ggagtatctctggttgggatctatgtgataagtaag 33390518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 33642088 - 33642256
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    |||||||||||||||||||||| | |||||||||||| |||||||  |||||||||| |||||||||||||||||||| |||||||| ||| ||||||||    
T  33642088 atgatgttgatccttctgaggtacgaaagcaaagtggaatttattgggaagcttttgtcaaacatgaacaaagattccaacaagactttcaaatggtgtc 33642187  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagtaat 170  Q
    ||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  33642188 aagatggagggaagctctaaaacaagtgg-ggagtatctctggttgggatctacgtgataagtaagtaat 33642256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 33288184 - 33288016
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    |||||||||||||||||||||| | |||||||||||||||||||  |||||| ||| ||| ||||||||||| ||||| |||||||||||||||||||||    
T  33288184 atgatgttgatccttctgaggtgcgaaagcaaagtgggatttatggtgaagcctttaccatacatgaacaaacattccaacaagactctcagatggtgtc 33288085  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagtaat 170  Q
    ||||||||| ||||| |||||||||||||  ||||||| |||||||||||||| ||||||||||||||||    
T  33288084 aagatggagggaagccctaaaacaagtgg-ggagtatcgctggttgggatctatgtgataagtaagtaat 33288016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 33403220 - 33402985
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    |||||||||||||||||||||||| |||||||||||| ||||||| |||||| |||| ||| |||||| ||||||||| ||||| || | ||||||||||    
T  33403220 atgatgttgatccttctgaggttcgaaagcaaagtggtatttattgtgaagcctttgtcaagcatgaaaaaagattccaacaaggctttgagatggtgtc 33403121  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagtaatctatcannnnnnnnnngttgtacaaattat 200  Q
    ||||||||| |||||||||||||||||||  |||||| ||||||||||||||| |||||||||||||||| |||             |||||  || |||    
T  33403120 aagatggagggaagctctaaaacaagtgg-ggagtatatctggttgggatctatgtgataagtaagtaatttat---agtgttttttttgtagtaaatat 33403025  T
Q  201 aaggtgaagggatggtgcacgagtccatgacagaaactca 240  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  33403024 aaggtgaagagatggtgcacgagtccaggacagaaactca 33402985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 9169467 - 9169295
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    |||||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||||  | |||| ||||| ||||||||    
T  9169467 atgatgttgatccttctgaggtgcgaaagcaaagtgggatttattgtgaagcatttgccaaacatgaacaaagattcaaataagattctcacatggtgtc 9169368  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagtaatctat 174  Q
    | |||||||  ||| | ||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||    
T  9169367 aggatggaggaaaggtttaaaacaagtgg-ggagtatctctggttgggacctacgtgataagtaagtaatctat 9169295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 33412527 - 33412362
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    ||||| |||||||||||||||| |  ||||||||||||||||||| |||| |||||| |||||||||||||||||||| ||||||| |||| | ||||||    
T  33412527 atgatattgatccttctgaggtgcggaagcaaagtgggatttattgtgaatcttttgtcaaacatgaacaaagattccaacaagaccctcataaggtgtc 33412428  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagt 167  Q
    ||||||||| |||||| |||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  33412427 aagatggagggaagctttaaaccaagtgg-ggagtatctctggttgggatctacgtgataagtaagt 33412362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 33060164 - 33059996
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    |||||||||||||||||||||| |  ||||||||||| ||||||  ||||||||||| |||||||||||||||||||| ||||||||||  || ||||||    
T  33060164 atgatgttgatccttctgaggtgcggaagcaaagtggaatttatagtgaagcttttgtcaaacatgaacaaagattccaacaagactctatgaaggtgtc 33060065  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagtaat 170  Q
    ||||||||||||||||||| | |||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  33060064 aagatggagagaagctctagagcaagtgg-ggagtatatctggttgggatctacgtgatgagtaagtaat 33059996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 33361107 - 33360940
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    |||||||||||||||||||||| |  |||||||||| |||||||  ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||    
T  33361107 atgatgttgatccttctgaggtgcggaagcaaagtgagatttatagtgaagcttttgtcaaacatgaacaaagattccaacaagactctaagaaggtgtc 33361008  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagtaa 169  Q
    || |||||| ||||||||| | |||||||  || |||||||||||||||||||| ||||||||||||||    
T  33361007 aatatggagggaagctctagagcaagtggggga-tatctctggttgggatctacatgataagtaagtaa 33360940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 33265491 - 33265323
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    ||||||||||||| ||||| ||   |||||||||||||||||||  |||||| |||  |||||||||||||||||||| ||||||   ||||| ||||||    
T  33265491 atgatgttgatccctctgatgtgagaaagcaaagtgggatttatggtgaagcctttatcaaacatgaacaaagattccaacaagaacatcagaaggtgtc 33265392  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagtaat 170  Q
    || |||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  33265391 aaaatggagggacgctctaaaacaagtgg-ggagtatctctggttgggatctacgtgataagtaagtaat 33265323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 33274635 - 33274467
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    ||||||||||||| ||||| ||   |||||||||||||||||||  |||||| |||  |||||||||||||||||||| ||||||   ||||| ||||||    
T  33274635 atgatgttgatccctctgatgtgagaaagcaaagtgggatttatggtgaagcctttatcaaacatgaacaaagattccaacaagaacatcagaaggtgtc 33274536  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagtaat 170  Q
    || |||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  33274535 aaaatggagggacgctctaaaacaagtgg-ggagtatctctggttgggatctacgtgataagtaagtaat 33274467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12781358 - 12781322
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgg 37  Q
    |||||||||||||||||||||| ||||||||||||||    
T  12781358 atgatgttgatccttctgaggtacaaaagcaaagtgg 12781322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12785548 - 12785512
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgg 37  Q
    |||||||||||||||||||||| ||||||||||||||    
T  12785548 atgatgttgatccttctgaggtacaaaagcaaagtgg 12785512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 33642282 - 33642334
Alignment:
Q  194 aaattataaggtgaagggatggtgcacgagtccatgacagaaactcaaagagt 246  Q
    ||| |||||||||||| ||||||||||||||| |  |||||||||||||||||    
T  33642282 aaaatataaggtgaagagatggtgcacgagtctagaacagaaactcaaagagt 33642334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 12781976 - 12781939
Alignment:
Q  135 tatctctggttgggatctacgtgataagtaagtaatct 172  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  12781976 tatctctggctgggatctacgtgataagtaagcaatct 12781939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12786288 - 12786252
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgg 37  Q
    |||||||||||||||||||||| | ||||||||||||    
T  12786288 atgatgttgatccttctgaggtgcgaaagcaaagtgg 12786252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 33287982 - 33287930
Alignment:
Q  198 tataaggtgaagggatggtgcacgagtccatgacagaaactcaaagagtactt 250  Q
    |||| ||||||  ||||||||||||||||| || ||||| |||||||||||||    
T  33287982 tatacggtgaaatgatggtgcacgagtccaagatagaaattcaaagagtactt 33287930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 17438160 - 17438328
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    |||||||||||||||||||||| | |||||||||||||||||||  ||||||||||| |||||||||||||||||||| |||||||  ||||| ||||||    
T  17438160 atgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaagcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtc 17438259  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagtaat 170  Q
    ||||||||| ||||||||||| |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  17438260 aagatggagggaagctctaaagcaagtgg-ggagtatcgctggttgggatctacgtgataagtaagtaat 17438328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 747 - 587
Alignment:
Q  9 gatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtcaagatgga 108  Q
    ||||||||||||||  |||||||||||||||||||||  || | |||||||||||||||||||||||||  ||||||| |||| | ||||||||||||||    
T  747 gatccttctgaggtaaaaaagcaaagtgggatttattgggacgattttgccaaacatgaacaaagattcaaacaagaccctcataaggtgtcaagatgga 648  T
Q  109 gagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagtaat 170  Q
    | ||||||||||| |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  647 gggaagctctaaaccaagtgg-ggagtatcgctggttgggatctacgtgataagtaagtaat 587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 9508 - 9348
Alignment:
Q  9 gatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtcaagatgga 108  Q
    ||||||||||||||  |||||||||||||||||||||  || | |||||||||||||||||||||||||  ||||||| |||| | ||||||||||||||    
T  9508 gatccttctgaggtaaaaaagcaaagtgggatttattgggacgattttgccaaacatgaacaaagattcaaacaagaccctcataaggtgtcaagatgga 9409  T
Q  109 gagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagtaat 170  Q
    | ||||||||||| |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  9408 gggaagctctaaaccaagtgg-ggagtatcgctggttgggatctacgtgataagtaagtaat 9348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 31496427 - 31496590
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    |||||||||| ||||||  ||| | |||||||||||| ||||||  |||||| |||| |||||||||||||||||||| |||||||||||||||||||      
T  31496427 atgatgttgacccttctatggtgcgaaagcaaagtggaatttatggtgaagcatttgtcaaacatgaacaaagattccaacaagactctcagatggtgca 31496526  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaa 165  Q
    ||||||||| |||||||||| |||||| ||||| | |||||||||||||||||| ||||||||||    
T  31496527 aagatggagggaagctctaatacaagtcgctga-tctctctggttgggatctacatgataagtaa 31496590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 31501597 - 31501760
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    |||||||||||||| | | ||| | |||||||||||||||||||| |||||| |||| |||||||||||||| ||||| |||||||||||||||||||      
T  31501597 atgatgttgatcctcccgtggtgcgaaagcaaagtgggatttattgtgaagcatttgtcaaacatgaacaaatattccaacaagactctcagatggtgct 31501696  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaa 165  Q
    ||||||||| |||||||| | |||||| || | || | |||||||| ||||||||||||||||||    
T  31501697 aagatggagggaagctctgacacaagtcgccg-gtctatctggttgcgatctacgtgataagtaa 31501760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 31476487 - 31476657
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    |||||||||||||||||  ||| | |||||||| ||||||||||  |||||| |||| | |||||| ||| ||||||  |||||||||||| ||||||      
T  31476487 atgatgttgatccttctttggtgcgaaagcaaactgggatttatagtgaagcatttgtccaacatggacacagattcaaacaagactctcaaatggtgct 31476586  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagtaatct 172  Q
    | ||||||| | |||||| | |||||| || || | ||||||||||||||||||||||||||||| ||||||    
T  31476587 acgatggagggcagctctgacacaagtcgccga-tctctctggttgggatctacgtgataagtaaataatct 31476657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 31162201 - 31162091
Alignment:
Q  59 caaacatgaacaaagattccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtga 158  Q
    |||||||||||||||||||| |||||||||| ||||||||  ||||||||| ||||||| || |||||| ||     ||||||||||||||| | ||| |    
T  31162201 caaacatgaacaaagattccaacaagactctgagatggtgcaaagatggagggaagctcaaacacaagtcgc---caatctctggttgggatgtgcgtca 31162105  T
Q  159 taagtaagtaatct 172  Q
    ||||||||||||||    
T  31162104 taagtaagtaatct 31162091  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 31489072 - 31489242
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    ||||||||||||||||||||||   | | ||||  || |||||   |||||| ||| ||||||||||||||| ||||| ||| ||||||||  ||||       
T  31489072 atgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaacatgaacaaacattccaacatgactctcatgtggtaca 31489171  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaagtaatct 172  Q
    ||||||||| |||||||| | ||||||||  || |||||| || |||||||| ||||||||||||| |||||    
T  31489172 aagatggagggaagctctgacacaagtgg-ggaatatctcaggctgggatcttcgtgataagtaagcaatct 31489242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 31020480 - 31020316
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    ||||||||||||||||||||||   | | ||||  || |||||   |||||| ||| ||||||||||||||| ||||| ||| ||||||||  ||||       
T  31020480 atgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaacatgaacaaacattccaacatgactctcatgtggtaca 31020381  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaag 166  Q
    ||| ||||| |||||||| | ||||||||  || ||||||||| |||||||| |||||||||||||    
T  31020380 aagttggagggaagctctgacacaagtgg-ggaatatctctggctgggatcttcgtgataagtaag 31020316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 31030361 - 31030197
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtc 100  Q
    ||||||||||||||||||||||   | | ||||  || |||||   |||||| ||| ||||||||||||||| ||||| ||| || |||||  ||||       
T  31030361 atgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaacatgaacaaacattccaacatgaatctcatgtggtaca 31030262  T
Q  101 aagatggagagaagctctaaaacaagtggctgagtatctctggttgggatctacgtgataagtaag 166  Q
    ||| ||||| |||||||| | ||||||||  || ||||||||| |||||||| |||||||||||||    
T  31030261 aagttggagggaagctctgacacaagtggg-gaatatctctggctgggatcttcgtgataagtaag 31030197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 172
Target Start/End: Complemental strand, 31150944 - 31150814
Alignment:
Q  41 ttattctgaagcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtggctgagtatctc 140  Q
    |||| ||||||| || || ||||||||| ||||||||| |||| ||| | | || |||  ||||||||| ||||| || | |||||||||  | | ||||    
T  31150944 ttatgctgaagccttagctaaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaa-tctctc 31150846  T
Q  141 tggttgggatctacgtgataagtaagtaatct 172  Q
    ||| |||||| ||||| |||||||||||||||    
T  31150845 tggatgggatgtacgttataagtaagtaatct 31150814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 31482326 - 31482393
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaa 68  Q
    |||||||  |||| |||||||| | |||||||||||||| |||| || |||| |||||||||||||||    
T  31482326 atgatgtcaatccatctgaggtacgaaagcaaagtgggagttatgctaaagcctttgccaaacatgaa 31482393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 31529141 - 31529056
Alignment:
Q  1 atgatgttgatccttctgaggttcaaaagcaaagtgggatttattctgaagcttttgccaaacatgaacaaagattccgacaagac 86  Q
    |||||||||||||||| ||||| | |||||||||||||| ||||    |||| |||||| |||||||  ||||||||  |||||||    
T  31529141 atgatgttgatccttccgaggtgcgaaagcaaagtgggagttataaaaaagcatttgcccaacatgaggaaagattcaaacaagac 31529056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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