View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_56 (Length: 266)
Name: NF18278_low_56
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 90 - 246
Target Start/End: Complemental strand, 54294981 - 54294825
Alignment:
| Q |
90 |
caaatgattgaggagcttggtcataaagtgatgtttcctcaatgtcatcggatcataatttacaaggaaagtatcagtcctattggaggaataagttgtt |
189 |
Q |
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| T |
54294981 |
caaatgattgaggagcttggtcataaagtgatgtttcctcaatgtcatcggatcataatttacaaggaaagtatcagtcctattggaggaataagttgtt |
54294882 |
T |
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| Q |
190 |
aattgttattcttgtttacacaaagaattatatgattgtggttatttggggtattac |
246 |
Q |
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| T |
54294881 |
aattgttattcttgtttacacaaagaattatatgattgtggttatttggggtattac |
54294825 |
T |
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Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 54300134 - 54300054
Alignment:
| Q |
13 |
agcagagaagaatatttggtacaacaattagattgatttgaacagatatagccctattaaactataaataaaaagatcaaa |
93 |
Q |
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| T |
54300134 |
agcagggaagaatatttggtacaacaattagattgatttgaacagatatagccctattaaactataaataaaaagatcaaa |
54300054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 54306281 - 54306207
Alignment:
| Q |
19 |
gaagaatatttggtacaacaattagattgatttgaacagatatagccctattaaactataaataaaaagatcaaa |
93 |
Q |
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| T |
54306281 |
gaagaatttttggtacaacaattagattgatttgaacaaatatagccctataaaactataaattaaaagatcaaa |
54306207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 54287473 - 54287439
Alignment:
| Q |
60 |
atagccctattaaactataaataaaaagatcaaat |
94 |
Q |
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| T |
54287473 |
atagccctattaaactaaaaataaaaagatcaaat |
54287439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 42446592 - 42446653
Alignment:
| Q |
171 |
attggaggaataagttgttaattgttattcttgtttacacaaagaattatatgattgtggtt |
232 |
Q |
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| T |
42446592 |
attggaggaataattaattaattgtttttcttgttttcaccaagaggtatatgattgtggtt |
42446653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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