View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_57 (Length: 265)
Name: NF18278_low_57
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 1668613 - 1668362
Alignment:
| Q |
1 |
aaacctgtttccctttcaagatttctttttggttgtggacataacaacactgggagttttaatgaccatgagatgggtctcattggtcttggaggaggac |
100 |
Q |
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| T |
1668613 |
aaacctgtttccctttcaagatttctttttggttgtggacataacaacactgggggttttaatgaccatgagatgggtctaattggtcttggaggaggac |
1668514 |
T |
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| Q |
101 |
caacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaat |
200 |
Q |
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| T |
1668513 |
caacatcactcatttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaat |
1668414 |
T |
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| Q |
201 |
gagttttggaaaagggagtgaagtgttaggaaatggtgttgtaactactcct |
252 |
Q |
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| T |
1668413 |
gagttttggaaaagggagtcaagtgttaggaaatggtgttgttactactcct |
1668362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 1661351 - 1661104
Alignment:
| Q |
1 |
aaacctgtttccctttcaagatttctttttggttgtggacataacaacactgggagttttaatgaccatgagatgggtctcattggtcttggaggaggac |
100 |
Q |
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| T |
1661351 |
aaacttgtttccctttcaagatttctttttggttgtggacataacaacactgggggttttaatgaccatgagatgggtctaattggtcttggaggaggac |
1661252 |
T |
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| Q |
101 |
caacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaat |
200 |
Q |
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| T |
1661251 |
caacatcactcatttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaat |
1661152 |
T |
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| Q |
201 |
gagttttggaaaagggagtgaagtgttaggaaatggtgttgtaactac |
248 |
Q |
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| T |
1661151 |
gagttttggaaaagggagtcaagtgttaggggatggtgtggttactac |
1661104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 1680149 - 1679920
Alignment:
| Q |
1 |
aaacctgtttccctttcaagatttctttttggttgtggacataacaacactgggagttttaatgaccatgagatgggtctcattggtcttggaggaggac |
100 |
Q |
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| T |
1680149 |
aaacctatttcccttcaaggaattctttttggttgtggacataacaacacagggaattttaatgaccatgagatgggtctcattggtcttggaggaggac |
1680050 |
T |
|
| Q |
101 |
caacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| ||| |
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| T |
1680049 |
caacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgacataacaatttcaagccaaat |
1679950 |
T |
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| Q |
201 |
gagttttggaaaagggagtgaagtgttagg |
230 |
Q |
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| T |
1679949 |
gagttttggaaaagggagtgaagtgttagg |
1679920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 239
Target Start/End: Complemental strand, 24547027 - 24546814
Alignment:
| Q |
26 |
tttttggttgtggacataacaacactgggagttttaatgaccatgagatgggtctcattggtcttggaggaggaccaacgtcacttgtttctcaaatagg |
125 |
Q |
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||||||| |||||||||||||||| ||| ||| |||||| | ||||||||| | || ||||||||| ||||||| |||||| |||||||||||||| |
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| T |
24547027 |
tttttggatgtggacataacaacaatggtgttttcaatgacaaagagatgggtataataggtcttggaagaggacccttgtcactcgtttctcaaatagg |
24546928 |
T |
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| Q |
126 |
tcctttatttggaggcaaaaagttttctcaatgtttggttcctttcctcaccgatatcaaaatttcaagccgaatgagttttggaaaagggagtgaagtg |
225 |
Q |
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| ||| ||||||||||| | ||||||||||||||||||||| |||| ||| | | ||| |||||| |||||||||||| ||||| |||||||| |
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| T |
24546927 |
ttcttcttttggaggcaagatgttttctcaatgtttggttccattccacactaaccctagtattacaagcccaatgagttttggtaaaggaagtgaagta |
24546828 |
T |
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| Q |
226 |
ttaggaaatggtgt |
239 |
Q |
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| T |
24546827 |
ttggggaatggtgt |
24546814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 15798097 - 15798000
Alignment:
| Q |
70 |
gagatgggtctcattggtcttggaggaggaccaacgtcacttgtttctcaaataggtcctttatttggaggcaaaaagttttctcaatgtttggttcc |
167 |
Q |
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| T |
15798097 |
gagatgggtataataggtcttggaagaggacccttgtcacttgtttctcaaataggttcttcccttggaggcaacatgttttctcaatgtttggttcc |
15798000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 15797980 - 15797928
Alignment:
| Q |
187 |
atttcaagccgaatgagttttggaaaagggagtgaagtgttaggaaatggtgt |
239 |
Q |
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| T |
15797980 |
atttcaagcccaatgagttttggtaaaggaagtgaagtattggggaatggtgt |
15797928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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