View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_58 (Length: 265)
Name: NF18278_low_58
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 41588812 - 41589043
Alignment:
| Q |
17 |
aaaggagttgttgatccactccatgaacaaagtaagagtgaattcacttccactgttcttggttttataaacaaatttctcatggaagatgatgactcag |
116 |
Q |
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| T |
41588812 |
aaaggagttgttgatccactccatgaacaaagtaagagtgaattcacttccactgttcttggttttataaacaaatttctcatggaagatgatgactcag |
41588911 |
T |
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| Q |
117 |
aggaagactacaatatgttccaacatcatgaacatgaagagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaaga |
216 |
Q |
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| T |
41588912 |
aggaagactacaatatgttccaacatcatgaacatgaagtgtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaaga |
41589011 |
T |
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| Q |
217 |
gtacactcagttccaagattcttttgctcttc |
248 |
Q |
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| T |
41589012 |
gtacactcagttccaagattcttttgctcttc |
41589043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 64 - 248
Target Start/End: Original strand, 41556217 - 41556401
Alignment:
| Q |
64 |
ttccactgttcttggttttataaacaaatttctcatggaagatgatgactcagaggaagactacaatatgttccaacatcatgaacatgaagagtcttcc |
163 |
Q |
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| T |
41556217 |
ttccactattcttggttttataaacaaatttctcatggaagatgatgacatagaggaagactacaatatgttccaacatcatgaacatgaggagtcttcc |
41556316 |
T |
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| Q |
164 |
actgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagagtacactcagttccaagattcttttgctcttc |
248 |
Q |
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| T |
41556317 |
actgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagaatacactatgttccaagattcttttgctcttc |
41556401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 24 - 248
Target Start/End: Original strand, 41569874 - 41570098
Alignment:
| Q |
24 |
ttgttgatccactccatgaacaaagtaagagtgaattcacttccactgttcttggttttataaacaaatttctcatggaagatgatgactcagaggaaga |
123 |
Q |
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| T |
41569874 |
ttgttgattcacaccatgaacaaagtgagagtgaattctcttcccctattcttggttatgtaagcaaatttctcatggaagatgatgacatagaggaaga |
41569973 |
T |
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| Q |
124 |
ctacaatatgttccaacatcatgaacatgaagagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagagtacact |
223 |
Q |
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| T |
41569974 |
ctacaatatgttccaacacaatgaacatgatgggtcttccaatgctcttggttatataaaccgatttctcatggaagaagactttgaaaaagaatacact |
41570073 |
T |
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| Q |
224 |
cagttccaagattcttttgctcttc |
248 |
Q |
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| T |
41570074 |
atgttccaagattcctttgctcttc |
41570098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 41579046 - 41579104
Alignment:
| Q |
190 |
tctcatggaagaagactttgaaaaagagtacactcagttccaagattcttttgctcttc |
248 |
Q |
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| T |
41579046 |
tctcatggaagaagactttgaaaaggagtacactatgttccaagattcttttactcttc |
41579104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 41556312 - 41556354
Alignment:
| Q |
63 |
cttccactgttcttggttttataaacaaatttctcatggaaga |
105 |
Q |
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| T |
41556312 |
cttccactgttcttggttctataaaccaatttctcatggaaga |
41556354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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