View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18278_low_59 (Length: 264)
Name: NF18278_low_59
Description: NF18278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18278_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 7868891 - 7868661
Alignment:
| Q |
19 |
aaacttacatgacatgattatccatgatgtcttccatgcctgcaataggggacctgaagatgggagggcaaggttctccactacataaggatatgtaacc |
118 |
Q |
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| T |
7868891 |
aaacttacatgacatgattatccatgatgtcttccatgcctgcaataggggacctgaagatgggagggcaaggttctccactacataaggatatgtaacc |
7868792 |
T |
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| Q |
119 |
attcattccaccactgcatgtatccctaaataacatcagaaagtagtcgagcaagatcttaaatttgccattataatttataaatcaaacatatgatgca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7868791 |
attcattccaccactgcatgtatccctaaataacatcagaaagtaatcgagcaagatcttaaatttgccattataatttataaatcaaacatatgatgca |
7868692 |
T |
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| Q |
219 |
aacaaaataatgtgatgcatacaacctgtcc |
249 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
7868691 |
aacaaaataatgtgatgcatacaacctgtcc |
7868661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 23890971 - 23891147
Alignment:
| Q |
18 |
aaaacttacatgacatgattatccatgatgtcttccatgcctgcaataggggacctgaagatgggagggcaaggttctccactacataaggatatgtaac |
117 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||| ||| |||||||||||||| ||| ||||||||||||| |
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| T |
23890971 |
aaaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtgacctgaagaaaggacggcaaggttctccatcacagaaggatatgtaac |
23891070 |
T |
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| Q |
118 |
cattcattccaccactgcatgtatccctaaataacatcagaaagtagtcgagcaagatcttaaatttgccattataa |
194 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||| |||| |||||||| |
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| T |
23891071 |
cattcattccaccactgcatgtatccataaatatcatcagaaaatagtcgagcaagatcttaattttgtcattataa |
23891147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 23178124 - 23178300
Alignment:
| Q |
18 |
aaaacttacatgacatgattatccatgatgtcttccatgcctgcaataggggacctgaagatgggagggcaaggttctccactacataaggatatgtaac |
117 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| ||| ||||||||||||| |
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| T |
23178124 |
aaaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtgacctgaagaaaggagggcaaggttctccatcacagaaggatatgtaac |
23178223 |
T |
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| Q |
118 |
cattcattccaccactgcatgtatccctaaataacatcagaaagtagtcgagcaagatcttaaatttgccattataa |
194 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| | |||| |||||||| |
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| T |
23178224 |
cattcattccaccactgcatgtatccataaataacatgagaaaatagtcgagcaagatcttcattttgtcattataa |
23178300 |
T |
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